Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 3
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES10309 | Sorghum | nucleus | 87.5 | 93.33 |
| GSMUA_Achr8P34280_001 | Banana | nucleus | 55.9 | 59.85 |
| CDY02941 | Canola | nucleus | 57.29 | 59.35 |
| CDX76092 | Canola | plastid | 57.29 | 58.51 |
| GSMUA_Achr1P17340_001 | Banana | nucleus | 53.82 | 57.84 |
| AT3G55460.1 | Thale cress | mitochondrion, nucleus | 52.43 | 57.63 |
| KRH15102 | Soybean | nucleus | 54.17 | 57.56 |
| KRH73034 | Soybean | nucleus | 54.17 | 56.52 |
| Bra014741.1-P | Field mustard | mitochondrion, nucleus, plastid | 57.29 | 55.93 |
| Zm00001d029629_P001 | Maize | nucleus | 8.68 | 55.56 |
| Zm00001d047401_P001 | Maize | nucleus | 37.5 | 50.0 |
| Zm00001d022243_P002 | Maize | nucleus | 36.11 | 49.76 |
| VIT_13s0019g01060.t01 | Wine grape | nucleus | 58.33 | 47.59 |
| Zm00001d029305_P001 | Maize | nucleus | 26.39 | 46.34 |
| Zm00001d019443_P002 | Maize | nucleus | 17.01 | 46.23 |
| Zm00001d030739_P002 | Maize | mitochondrion, nucleus, plastid | 57.99 | 45.26 |
| Zm00001d016504_P001 | Maize | nucleus | 11.46 | 44.0 |
| Zm00001d005285_P001 | Maize | nucleus | 21.53 | 43.36 |
| Zm00001d004470_P001 | Maize | nucleus | 16.67 | 43.24 |
| Zm00001d010881_P001 | Maize | nucleus | 23.61 | 37.16 |
| Zm00001d029256_P002 | Maize | nucleus | 30.56 | 35.92 |
| Zm00001d012570_P002 | Maize | extracellular | 18.4 | 32.52 |
| Zm00001d015189_P001 | Maize | nucleus | 18.06 | 29.55 |
| Zm00001d005739_P004 | Maize | cytosol | 11.11 | 29.09 |
| Zm00001d006906_P010 | Maize | mitochondrion | 23.96 | 27.38 |
| Zm00001d022189_P002 | Maize | nucleus | 22.92 | 25.98 |
| Zm00001d043759_P001 | Maize | cytosol | 13.89 | 25.97 |
| Os11t0704700-01 | Rice | nucleus | 43.4 | 24.46 |
| Zm00001d052803_P004 | Maize | nucleus | 24.31 | 23.26 |
| Zm00001d013841_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 17.36 | 23.15 |
| Zm00001d004722_P001 | Maize | cytosol | 7.99 | 21.7 |
| Zm00001d010176_P001 | Maize | cytosol | 7.99 | 20.18 |
| Zm00001d031269_P002 | Maize | nucleus | 23.96 | 20.06 |
| TraesCS4A01G176000.13 | Wheat | nucleus | 47.57 | 15.05 |
| TraesCS4D01G136700.4 | Wheat | nucleus | 46.53 | 14.77 |
| HORVU4Hr1G027820.11 | Barley | nucleus, plastid | 47.57 | 12.52 |
| TraesCS4B01G141700.1 | Wheat | nucleus | 34.03 | 12.34 |
| Zm00001d029380_P002 | Maize | cytosol, nucleus, plasma membrane | 17.71 | 11.81 |
Protein Annotations
| MapMan:16.4.6.2 | Gene3D:3.30.70.330 | UniProt:A0A1D6PN12 | ProteinID:AQK48251.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000842B2F6 | EnsemblPlantsGene:Zm00001d048609 | EnsemblPlants:Zm00001d048609_P001 | EnsemblPlants:Zm00001d048609_T001 | SEG:seg |
Description
Serine/arginine-rich SC35-like splicing factor SCL30
Coordinates
chr4:+:1277393..1280951
Molecular Weight (calculated)
32639.9 Da
IEP (calculated)
11.717
GRAVY (calculated)
-1.472
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSMSFGNAL VQIPGRMGRY SPAYSPPRRG HGGRGRSPPP RRGYGGGRGD HGSVSLLVRN IPLRCRPEEL RVPFERFGPV RDVYLPRDYH TGEPRGFGFV
101: EFVDAYDASE AQYHMNRQMF AGREITVVLA ADTRKRPEDM RRRTGPRGYS GHEGRRPNRH GNLSAGRSRS RSYSRSRSPR PRGRGRSQSY SPAPKRRDDY
201: SASPPRAKEE HPRSSKQPKE NNRDRRRSYT PDDINDRRGA DNGRDERKRS PAGEEDEEPR RGHHRSPRPA SMSPPGSRSR SASPAISD
101: EFVDAYDASE AQYHMNRQMF AGREITVVLA ADTRKRPEDM RRRTGPRGYS GHEGRRPNRH GNLSAGRSRS RSYSRSRSPR PRGRGRSQSY SPAPKRRDDY
201: SASPPRAKEE HPRSSKQPKE NNRDRRRSYT PDDINDRRGA DNGRDERKRS PAGEEDEEPR RGHHRSPRPA SMSPPGSRSR SASPAISD
001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
Arabidopsis Description
SCL30Serine/arginine-rich SC35-like splicing factor SCL30 [Source:UniProtKB/Swiss-Prot;Acc:Q8L3X8]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.