Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G136700.4 | Wheat | nucleus | 94.18 | 94.49 |
| TraesCS4B01G141700.1 | Wheat | nucleus | 78.24 | 89.67 |
| HORVU4Hr1G027820.11 | Barley | nucleus, plastid | 79.23 | 65.9 |
| EES10309 | Sorghum | nucleus | 15.71 | 52.96 |
| GSMUA_Achr8P34280_001 | Banana | nucleus | 15.6 | 52.79 |
| TraesCS4A01G289300.1 | Wheat | nucleus | 14.95 | 51.13 |
| CDY02941 | Canola | nucleus | 15.6 | 51.08 |
| CDX76092 | Canola | plastid | 15.71 | 50.71 |
| KRH15102 | Soybean | nucleus | 15.05 | 50.55 |
| GSMUA_Achr1P17340_001 | Banana | nucleus | 14.84 | 50.37 |
| TraesCS5A01G079000.1 | Wheat | nucleus | 16.15 | 49.66 |
| KRH73034 | Soybean | nucleus | 15.05 | 49.64 |
| AT3G55460.1 | Thale cress | mitochondrion, nucleus | 14.07 | 48.85 |
| Bra014741.1-P | Field mustard | mitochondrion, nucleus, plastid | 15.71 | 48.47 |
| Zm00001d048609_P001 | Maize | nucleus, plastid | 15.05 | 47.57 |
| VIT_13s0019g01060.t01 | Wine grape | nucleus | 15.93 | 41.08 |
| TraesCS2A01G155100.1 | Wheat | nucleus | 8.68 | 38.54 |
| TraesCS4A01G141800.2 | Wheat | nucleus | 7.91 | 28.8 |
| Os11t0704700-01 | Rice | nucleus | 14.62 | 26.03 |
| TraesCS2A01G162700.3 | Wheat | nucleus | 5.71 | 21.85 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G176000.13 | EnsemblPlantsGene:TraesCS4A01G176000 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| MapMan:16.4.6.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:447045146..447054147
Molecular Weight (calculated)
104610.0 Da
IEP (calculated)
10.258
GRAVY (calculated)
-1.970
Length
910 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRSRSPKGG DDGRRRSTPR RSSDEQGGRK EKGPISLLVR NIPHNCRYED LRVPFAKFGP VRDIYMPKDY YSGEPKGFAF IEFFDSHDAS EAQYHMNRKL
101: FCGREIKVEP ATDKRKRPED MRRRTGVRVH SGSKGRDLSS HGRSRSRSHS RSPRQGGRDR SRSHSPAPRR RGDYSASPKR KEECQAKSSG QSKEHDNDKK
201: LGSCTPGGRS ERHDTDNYSN ERRATPDYSA APKRKEACQT KSPRQANEHD EDKNRISFSP DRNNCRDADN GHNERDDYFT SSKRKGERLS KSLRLSKEHD
301: KDKKRRSYSR DDRSDCRDAD NSFKERRATT DGGKRSCPRQ RSPRPSSGSH SRRRDAYSAS PKGKEEHREQ SPRQSKEHDK HRKRRSNTPD DRNDCHGADH
401: SHNEMQGDCS TSPRIKEERQ AKSSRESEEY NKDTKGAPHD RNDRHDAVNG SRDSNLHVDR KPVTPDDEGS HACWRSPRPS SGSCSRKRDD CSASPNKKEE
501: RRAKSPKQSI EYKDEKRRSC TADDMNGRHN AVNGYKKRRD GYSASPKIKE ECRAESPRPT KEREDNGGID RTDADNGYNE RRAGPDSASQ KRMEKPPQAK
601: SQSQSKEYDN GKENRSYTHD DGKECRNADN GSKVRKDYSA AGKRKEERQA SLPRQSKEHD EHKKRGSYTR DDRNDLRDAD NGSKERKDYS AAGKRKEERQ
701: ASLPRQSKEH DEHTKRGCYT RDDRNDLCDA DNGSKERRKD YSAAGKRKEE RQASLPRQSK EHDEHKKRGS YTPDDRDDPR DADNGSKERR NDYSASRKRM
801: EDYRAKSSRQ SKEHGDDKKR GSCTPDDRSH RSDADNGLRE RQGDFSASGQ RKEEYRGKSP RQLKEHGDNK KRGSYTPADR NDLDNGCNEK LATHDGSRSP
901: CPGRRSPRPS
101: FCGREIKVEP ATDKRKRPED MRRRTGVRVH SGSKGRDLSS HGRSRSRSHS RSPRQGGRDR SRSHSPAPRR RGDYSASPKR KEECQAKSSG QSKEHDNDKK
201: LGSCTPGGRS ERHDTDNYSN ERRATPDYSA APKRKEACQT KSPRQANEHD EDKNRISFSP DRNNCRDADN GHNERDDYFT SSKRKGERLS KSLRLSKEHD
301: KDKKRRSYSR DDRSDCRDAD NSFKERRATT DGGKRSCPRQ RSPRPSSGSH SRRRDAYSAS PKGKEEHREQ SPRQSKEHDK HRKRRSNTPD DRNDCHGADH
401: SHNEMQGDCS TSPRIKEERQ AKSSRESEEY NKDTKGAPHD RNDRHDAVNG SRDSNLHVDR KPVTPDDEGS HACWRSPRPS SGSCSRKRDD CSASPNKKEE
501: RRAKSPKQSI EYKDEKRRSC TADDMNGRHN AVNGYKKRRD GYSASPKIKE ECRAESPRPT KEREDNGGID RTDADNGYNE RRAGPDSASQ KRMEKPPQAK
601: SQSQSKEYDN GKENRSYTHD DGKECRNADN GSKVRKDYSA AGKRKEERQA SLPRQSKEHD EHKKRGSYTR DDRNDLRDAD NGSKERKDYS AAGKRKEERQ
701: ASLPRQSKEH DEHTKRGCYT RDDRNDLCDA DNGSKERRKD YSAAGKRKEE RQASLPRQSK EHDEHKKRGS YTPDDRDDPR DADNGSKERR NDYSASRKRM
801: EDYRAKSSRQ SKEHGDDKKR GSCTPDDRSH RSDADNGLRE RQGDFSASGQ RKEEYRGKSP RQLKEHGDNK KRGSYTPADR NDLDNGCNEK LATHDGSRSP
901: CPGRRSPRPS
001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
Arabidopsis Description
SCL30Serine/arginine-rich SC35-like splicing factor SCL30 [Source:UniProtKB/Swiss-Prot;Acc:Q8L3X8]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.