Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G168700.1 | Wheat | mitochondrion, nucleus | 97.61 | 97.61 |
| TraesCS4A01G157700.1 | Wheat | mitochondrion | 97.95 | 96.96 |
| HORVU4Hr1G046940.7 | Barley | mitochondrion, nucleus | 93.86 | 93.22 |
| Os03t0344100-02 | Rice | mitochondrion, nucleus | 87.37 | 89.51 |
| EER94870 | Sorghum | mitochondrion, nucleus | 85.67 | 87.76 |
| Zm00001d047498_P003 | Maize | nucleus | 84.64 | 87.02 |
| TraesCS3B01G293100.1 | Wheat | cytosol | 64.16 | 73.73 |
| Bra018581.1-P | Field mustard | cytosol | 54.61 | 68.97 |
| TraesCS1B01G244200.1 | Wheat | cytosol, mitochondrion, nucleus | 62.8 | 68.4 |
| TraesCS2B01G130400.1 | Wheat | nucleus | 80.2 | 67.92 |
| CDY66028 | Canola | cytosol | 57.0 | 66.01 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 64.51 | 65.62 |
| Solyc01g099810.2.1 | Tomato | nucleus | 58.02 | 64.39 |
| CDX91319 | Canola | nucleus | 64.85 | 63.55 |
| PGSC0003DMT400029666 | Potato | nucleus | 67.58 | 62.86 |
| KRG92904 | Soybean | nucleus | 58.7 | 62.32 |
| AT1G09140.1 | Thale cress | cytosol | 57.0 | 62.31 |
| KRG96443 | Soybean | nucleus | 66.21 | 61.98 |
| CDX97264 | Canola | nucleus | 64.16 | 61.64 |
| CDY22050 | Canola | nucleus | 64.51 | 61.16 |
| AT1G02840.1 | Thale cress | nucleus | 63.14 | 61.06 |
| Bra018550.1-P | Field mustard | nucleus | 54.27 | 60.92 |
| Bra036267.1-P | Field mustard | nucleus | 64.51 | 60.58 |
| CDY50385 | Canola | nucleus | 63.48 | 60.39 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 63.14 | 60.06 |
| KRH68188 | Soybean | nucleus | 60.75 | 59.53 |
| Solyc09g075090.1.1 | Tomato | nucleus | 61.77 | 59.34 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 58.36 | 58.56 |
| AT4G02430.4 | Thale cress | nucleus | 58.02 | 58.22 |
| CDX95008 | Canola | nucleus | 53.58 | 49.53 |
| PGSC0003DMT400063701 | Potato | nucleus | 53.92 | 47.88 |
| Solyc06g009060.2.1 | Tomato | nucleus | 39.93 | 44.66 |
| TraesCS3B01G151100.1 | Wheat | nucleus | 30.03 | 27.24 |
| TraesCS1B01G065900.2 | Wheat | nucleus | 31.4 | 26.98 |
| TraesCS1B01G130200.3 | Wheat | nucleus | 26.28 | 26.83 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G157000.1 | EnsemblPlantsGene:TraesCS4B01G157000 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR43933 |
| PANTHER:PTHR43933:SF6 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12599 | TIGR:cd12602 | MapMan:16.4.6.1 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:291886224..291894058
Molecular Weight (calculated)
32077.2 Da
IEP (calculated)
10.856
GRAVY (calculated)
-0.998
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRWSRTIY VGNLPGDIRE REVEDLFYKY GRIVDIDLKV PPRPPGYAFV EFEDPRDAED ACAGRDGYNF DGNRLRVEPA HGGRGSGGPS HDRSSSFGGG
101: GGGSGGGRRG VSRHTDYRVL VTGLPSSASW QDLKDHMRRA GDVCFAEVYR EGGGTIGIVD YTNYDDMKYA IKKLDDTEFK NAFSKGYIRV KEYDGKRGRS
201: YSRSRSPSRS RSKSRSPSKS PRARSASRSR SRSLSSRSCS ASKGRSPSRS PARSKSPIAS PANGVVASPA ASLKKRSPSR SPSRSRSLDA KSE
101: GGGSGGGRRG VSRHTDYRVL VTGLPSSASW QDLKDHMRRA GDVCFAEVYR EGGGTIGIVD YTNYDDMKYA IKKLDDTEFK NAFSKGYIRV KEYDGKRGRS
201: YSRSRSPSRS RSKSRSPSKS PRARSASRSR SRSLSSRSCS ASKGRSPSRS PARSKSPIAS PANGVVASPA ASLKKRSPSR SPSRSRSLDA KSE
001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
Arabidopsis Description
SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.