Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G151100.1 | Wheat | nucleus | 96.7 | 99.69 |
| TraesCS3D01G134500.1 | Wheat | nucleus | 95.2 | 97.84 |
| Os01t0155600-01 | Rice | nucleus | 81.68 | 83.95 |
| EES00292 | Sorghum | nucleus | 67.57 | 76.01 |
| PGSC0003DMT400060435 | Potato | nucleus | 57.36 | 63.67 |
| KRH67593 | Soybean | endoplasmic reticulum | 54.05 | 62.72 |
| KRG95876 | Soybean | nucleus | 53.75 | 62.37 |
| CDX80835 | Canola | nucleus | 47.75 | 60.0 |
| KRH67596 | Soybean | nucleus | 53.75 | 59.87 |
| CDY11223 | Canola | nucleus | 46.55 | 58.94 |
| GSMUA_Achr10P... | Banana | nucleus | 57.36 | 58.77 |
| CDX79732 | Canola | nucleus | 51.35 | 58.36 |
| VIT_08s0040g02860.t01 | Wine grape | nucleus | 46.55 | 58.27 |
| CDX78183 | Canola | nucleus | 49.25 | 57.95 |
| CDX73550 | Canola | nucleus | 48.95 | 57.39 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 48.65 | 57.04 |
| KRG95883 | Soybean | nucleus | 50.75 | 56.9 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 57.36 | 56.68 |
| Solyc05g054920.2.1 | Tomato | nucleus | 57.36 | 56.68 |
| CDY07586 | Canola | mitochondrion, nucleus | 48.95 | 56.6 |
| AT2G37340.1 | Thale cress | nucleus | 49.25 | 56.55 |
| Bra005756.1-P | Field mustard | nucleus | 39.04 | 56.52 |
| Bra003139.1-P | Field mustard | mitochondrion, nucleus | 48.95 | 56.01 |
| CDY52755 | Canola | mitochondrion, nucleus | 48.95 | 56.01 |
| Solyc09g005980.2.1 | Tomato | nucleus | 52.85 | 55.87 |
| PGSC0003DMT400061471 | Potato | nucleus | 52.25 | 55.24 |
| Bra007004.1-P | Field mustard | nucleus | 49.25 | 55.22 |
| TraesCS1A01G049700.1 | Wheat | nucleus | 56.16 | 54.68 |
| TraesCS1A01G108000.2 | Wheat | nucleus | 45.65 | 54.68 |
| CDY46773 | Canola | nucleus | 51.65 | 54.43 |
| Bra023114.1-P | Field mustard | nucleus | 51.65 | 54.43 |
| KRH42195 | Soybean | endoplasmic reticulum | 37.24 | 45.09 |
| KRH58317 | Soybean | nucleus | 26.13 | 39.73 |
| TraesCS1A01G229900.1 | Wheat | cytosol, mitochondrion, nucleus | 25.83 | 33.99 |
| TraesCS3A01G260000.1 | Wheat | cytosol | 23.72 | 30.98 |
| TraesCS4A01G157700.1 | Wheat | mitochondrion | 26.73 | 30.07 |
| TraesCS2A01G111600.2 | Wheat | mitochondrion, nucleus | 25.23 | 29.58 |
Protein Annotations
| MapMan:16.4.6.5 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF39 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | EnsemblPlantsGene:TraesCS3A01G308000 |
| EnsemblPlants:TraesCS3A01G308000.1 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3A:+:546568797..546571245
Molecular Weight (calculated)
37493.2 Da
IEP (calculated)
11.922
GRAVY (calculated)
-1.644
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRYDERDRY GGNTRLYVGR LPSRTRTRDL EDLFGRYGRV RHVDMKHEFA FVEFSDPRDA DEARYNLDGR DFDGSRMIVE FAKGVPRGQG GGGDRDRGRG
101: GDREYMGRGP PPGSGRCFNC GIDGHWARDC KAGDWKNRCY RCGDSGHIER DCQNSPKNLK RGKSYSRSPS PRRGRVRDRS YSRSRSRSYS RSVSPRRDER
201: RSRSPRDSRS PRRSPRDSRS PRRSPRDSRS PRRSPRDSRS PMKSPRGSRS PMRSPRDSRS PRRSASPAKG RARSPTPPGS RSPAPRENSR SPMKADSPNN
301: MSPAANGRSP SPRDGEDNGN HRAPSGSASP GGG
101: GDREYMGRGP PPGSGRCFNC GIDGHWARDC KAGDWKNRCY RCGDSGHIER DCQNSPKNLK RGKSYSRSPS PRRGRVRDRS YSRSRSRSYS RSVSPRRDER
201: RSRSPRDSRS PRRSPRDSRS PRRSPRDSRS PRRSPRDSRS PMKSPRGSRS PMRSPRDSRS PRRSASPAKG RARSPTPPGS RSPAPRENSR SPMKADSPNN
301: MSPAANGRSP SPRDGEDNGN HRAPSGSASP GGG
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
Arabidopsis Description
RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.