CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93223
KRG96443
KRG99320
KRH01744
KRH02172
KRH04931
KRH13056
KRH15102
KRH16160
KRH28659
KRH38014
KRH42160
KRH45698
KRH46935
KRH50944
KRH58277
KRH68188
KRH69931
KRH73034
KRH76798

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37340.1	KRG96443	AT1G02840.1	18674533
AT2G37340.1	KRH68188	AT1G02840.1	18674533
AT2G37340.1	KRG99320	AT1G23860.1	18674533
AT2G37340.1	KRH45698	AT1G23860.1	18674533
AT2G37340.1	KRG93223	AT1G53720.1	16497658
AT2G37340.1	KRH13056	AT1G53720.1	16497658
AT2G37340.1	KRH01744	AT2G43370.1	15987817
AT2G37340.1	KRH46935	AT2G43370.1	15987817
AT2G37340.1	KRH38014	AT3G13570.1	18674533
AT2G37340.1	KRH28659	AT3G50670.1	18674533
AT2G37340.1	KRH69931	AT3G50670.1	18674533
AT2G37340.1	KRH76798	AT3G50670.1	18674533
AT2G37340.1	KRH15102	AT3G55460.1	18674533
AT2G37340.1	KRH73034	AT3G55460.1	18674533
AT2G37340.1	KRH15102	AT3G55460.1	21798944
AT2G37340.1	KRH73034	AT3G55460.1	21798944
AT2G37340.1	KRH04931	AT4G31580.1	18674533
AT2G37340.1	KRH16160	AT4G31580.1	18674533
AT2G37340.1	KRH02172	AT5G18810.1	18674533
AT2G37340.1	KRH50944	AT5G18810.1	18674533
AT2G37340.1	KRH42160	AT5G64200.2	18674533
AT2G37340.1	KRH58277	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67593	Soybean	endoplasmic reticulum	97.21	97.21
KRH67596	Soybean	nucleus	85.02	81.61
KRG95883	Soybean	nucleus	81.88	79.12
CDX73550	Canola	nucleus	67.94	68.66
CDX78183	Canola	nucleus	67.6	68.55
AT3G53500.2	Thale cress	mitochondrion, nucleus	67.6	68.31
CDX79732	Canola	nucleus	69.34	67.92
AT2G37340.1	Thale cress	nucleus	67.25	66.55
CDY07586	Canola	mitochondrion, nucleus	66.55	66.32
VIT_08s0040g02860.t01	Wine grape	nucleus	61.32	66.17
CDX80835	Canola	nucleus	60.63	65.66
CDY52755	Canola	mitochondrion, nucleus	66.55	65.64
Bra003139.1-P	Field mustard	mitochondrion, nucleus	66.55	65.64
Bra007004.1-P	Field mustard	nucleus	67.6	65.32
CDY11223	Canola	nucleus	59.58	65.02
KRH42195	Soybean	endoplasmic reticulum	61.32	64.0
Bra023114.1-P	Field mustard	nucleus	70.03	63.61
CDY46773	Canola	nucleus	69.69	63.29
KXG21152	Sorghum	nucleus	67.6	62.18
Bra005756.1-P	Field mustard	nucleus	49.48	61.74
EES00292	Sorghum	nucleus	63.41	61.49
Solyc09g005980.2.1	Tomato	nucleus	67.25	61.27
PGSC0003DMT400061471	Potato	nucleus	66.9	60.95
GSMUA_Achr10P...	Banana	nucleus	67.6	59.69
Os01t0155600-01	Rice	nucleus	66.55	58.95
Os05t0120100-01	Rice	mitochondrion, nucleus	66.2	58.82
GSMUA_Achr6P15450_001	Banana	nucleus	68.29	58.16
Os03t0285900-01	Rice	nucleus	66.55	57.88
TraesCS1B01G065900.2	Wheat	nucleus	67.6	56.89
TraesCS1D01G051900.1	Wheat	nucleus	67.25	56.43
TraesCS1A01G049700.1	Wheat	nucleus	67.25	56.43
TraesCS3B01G151100.1	Wheat	nucleus	62.37	55.42
TraesCS1D01G111000.2	Wheat	nucleus	55.4	55.4
TraesCS1A01G108000.2	Wheat	nucleus	53.66	55.4
KRH58317	Soybean	nucleus	42.16	55.25
TraesCS1B01G130200.3	Wheat	nucleus	55.05	55.05
Zm00001d011004_P008	Maize	nucleus	64.81	55.03
EES18924	Sorghum	nucleus	65.16	54.84
TraesCS3D01G134500.1	Wheat	nucleus	61.67	54.63
Zm00001d011005_P005	Maize	nucleus	66.9	54.39
HORVU1Hr1G024060.21	Barley	nucleus	56.45	54.18
TraesCS3A01G308000.1	Wheat	nucleus	62.37	53.75
HORVU1Hr1G009950.7	Barley	nucleus, plastid	66.55	51.9
KXG21387	Sorghum	nucleus	47.39	51.32
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	63.76	49.33
Zm00001d037543_P001	Maize	nucleus	29.97	47.78
OQU77498	Sorghum	nucleus	17.07	44.14
Os05t0162600-01	Rice	nucleus	49.83	42.31
Zm00001d035551_P007	Maize	nucleus	47.74	34.95
KRG96443	Soybean	nucleus	32.75	30.03
KRH75557	Soybean	cytosol	11.5	29.73
KRH64312	Soybean	nucleus	27.53	29.59
KRH53616	Soybean	nucleus	25.78	28.14
KXG21391	Sorghum	nucleus	38.68	27.75
KRH68188	Soybean	nucleus	28.57	27.42
KRG92904	Soybean	nucleus	26.13	27.17

Protein Annotations

EntrezGene:100789862	MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EMBL:ACUP02012140	EnsemblPlantsGene:GLYMA_19G176100
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	UniProt:I1NA27
InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	EnsemblPlants:KRG95876	ProteinID:KRG95876	ProteinID:KRG95876.1
ProteinID:KRG95877.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158
PANTHER:PTHR23147	PANTHER:PTHR23147:SF21	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360
SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI000233F2F5	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr19:+:43606394..43609236

Molecular Weight (calculated)

32800.4 Da

IEP (calculated)

10.575

GRAVY (calculated)

-1.646

Length

287 amino acids

Sequence
(BLAST)

001: MPRYDDKYGN TRLYVGHLSS RTRSRDLERA FSRYGRVRGV DMKNDFAFVD FSDPRDADDA RYNLDGRDVD GSRIIVEFAK GAPRGSREYL GRGPPPGSGR
101: CFNCGLDGHW ARDCKAGDWK NKCYRCGERG HIERNCKNSP KKLSTRRGRS YSRSPVRSRS PHRGRSRDRS YSRDRSYSRS RSPVRREESP VREDRSQSPD
201: HKNSPQPSKT RKHSPSPDRS PQKRGDTSPD NDRLSRSPAR DPEDRGYDSP KVNGRSGSPS CSPRDDDRSP IDDDNNHRHS PRGSESP

Best Arabidopsis Sequence Match ( AT2G37340.1 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP

Arabidopsis Description

RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.