CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64312	Soybean	nucleus	95.82	94.38
CDX94214	Canola	cytosol	63.5	83.5
VIT_16s0098g01020.t01	Wine grape	nucleus	77.57	81.6
Bra017986.1-P	Field mustard	nucleus	80.61	74.65
Solyc03g082380.2.1	Tomato	nucleus	78.71	73.93
CDX86974	Canola	nucleus	75.29	73.61
CDY08133	Canola	cytosol	80.23	73.01
CDY00202	Canola	nucleus	75.67	72.36
Bra019595.1-P	Field mustard	nucleus	78.33	72.28
CDY05936	Canola	nucleus	80.23	71.53
Bra029955.1-P	Field mustard	nucleus	69.96	70.77
AT3G49430.4	Thale cress	nucleus	79.85	70.0
CDX68538	Canola	nucleus	74.52	69.5
GSMUA_Achr1P06160_001	Banana	nucleus	65.78	69.48
KRG92904	Soybean	nucleus	60.84	57.97
PGSC0003DMT400008347	Potato	cytosol	70.34	57.63
KRH68188	Soybean	nucleus	62.74	55.18
KRG96443	Soybean	nucleus	64.64	54.31
KRH75557	Soybean	cytosol	16.35	38.74
CDY61855	Canola	nucleus	75.29	33.5
KRG95876	Soybean	nucleus	28.14	25.78
KRH67593	Soybean	endoplasmic reticulum	28.14	25.78
KRH67596	Soybean	nucleus	27.76	24.41
KRG95883	Soybean	nucleus	26.62	23.57
KRH42195	Soybean	endoplasmic reticulum	21.29	20.36
KRH58317	Soybean	nucleus	12.17	14.61

Protein Annotations

EntrezGene:100800653	MapMan:16.4.6.1	Gene3D:3.30.70.330	EMBL:ACUP02003479	EnsemblPlantsGene:GLYMA_06G135500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
UniProt:I1KB06	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KRH53616	ProteinID:KRH53616	ProteinID:KRH53616.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43933	PANTHER:PTHR43933:SF5	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002339E69	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:11133471..11138481

Molecular Weight (calculated)

29271.1 Da

IEP (calculated)

10.851

GRAVY (calculated)

-0.912

Length

263 amino acids

Sequence
(BLAST)

001: MSGRFSRTIY VGNLPSDIRE SEIEDLFYKY GRIMDIELKV PPRPPCYCFV EFDNARDAED AIRGRDGYNF DGCRLRVELA HGGRGPSSSD RRGYGGGGGG
101: GGGGGGSGAG GGRFGISRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVSRDSEGT FGIVDYTNYD DMKYAIRKLD DTEFRNPWAR AYIRVRKYES
201: SRSRSHSRSP SRSRSPKRVR SRSLERSVSR SRSRSRSVSP IKSSRPRSRS RSGSPRQVLS GSG

Best Arabidopsis Sequence Match ( AT3G49430.6 )
(BLAST)

001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV

Arabidopsis Description

SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.