Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68538 | Canola | nucleus | 46.7 | 97.87 |
| Bra029955.1-P | Field mustard | nucleus | 41.12 | 93.46 |
| CDX86974 | Canola | nucleus | 41.79 | 91.82 |
| CDY00202 | Canola | nucleus | 42.13 | 90.55 |
| CDX94214 | Canola | cytosol | 29.78 | 88.0 |
| CDY08133 | Canola | cytosol | 42.81 | 87.54 |
| CDY05936 | Canola | nucleus | 43.32 | 86.78 |
| AT3G49430.4 | Thale cress | nucleus | 42.47 | 83.67 |
| KRH53616 | Soybean | nucleus | 33.5 | 75.29 |
| KRH64312 | Soybean | nucleus | 34.01 | 75.28 |
| VIT_16s0098g01020.t01 | Wine grape | nucleus | 31.64 | 74.8 |
| GSMUA_Achr1P06160_001 | Banana | nucleus | 30.8 | 73.09 |
| Solyc03g082380.2.1 | Tomato | nucleus | 31.81 | 67.14 |
| CDY66028 | Canola | cytosol | 26.9 | 62.85 |
| CDX91319 | Canola | nucleus | 29.1 | 57.53 |
| CDY22050 | Canola | nucleus | 29.27 | 55.99 |
| CDY50385 | Canola | nucleus | 28.93 | 55.52 |
| CDX97264 | Canola | nucleus | 28.6 | 55.41 |
| PGSC0003DMT400008347 | Potato | cytosol | 29.27 | 53.89 |
| CDX95008 | Canola | nucleus | 26.4 | 49.21 |
| CDX79732 | Canola | nucleus | 14.55 | 29.35 |
| CDY41599 | Canola | nucleus | 14.21 | 29.27 |
| CDY44717 | Canola | nucleus | 14.38 | 28.81 |
| CDX80835 | Canola | nucleus | 12.52 | 27.92 |
| CDY46773 | Canola | nucleus | 14.89 | 27.85 |
| CDX78183 | Canola | nucleus | 13.2 | 27.56 |
| CDY11223 | Canola | nucleus | 12.18 | 27.38 |
| CDX73550 | Canola | nucleus | 13.03 | 27.11 |
| CDY07586 | Canola | mitochondrion, nucleus | 13.2 | 27.08 |
| CDY52755 | Canola | mitochondrion, nucleus | 13.2 | 26.8 |
| CDY45333 | Canola | nucleus, plastid, vacuole | 3.21 | 15.57 |
Protein Annotations
| MapMan:15.4.4.1 | MapMan:16.4.6.1 | Gene3D:3.30.70.330 | GO:A0A078JC75 | UniProt:A0A078JC75 | EnsemblPlants:CDY61855 |
| ProteinID:CDY61855 | ProteinID:CDY61855.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00034497001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR43933 | PANTHER:PTHR43933:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0004EEC970 | SEG:seg | : | : | : | : |
Description
BnaAnng17860DBnaAnng17860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JC75]
Coordinates
chrLK034050:+:28275..34286
Molecular Weight (calculated)
67689.1 Da
IEP (calculated)
5.277
GRAVY (calculated)
-0.971
Length
591 amino acids
Sequence
(BLAST)
(BLAST)
001: MIDLYAVWFE SFKYDPRNDP ESRVYQRMEF RVPPELRSYC DANATNKSKP RWNDICAFKL FPFKCQTFLQ LFELDDEYIQ REIRKPRKQT TCSHKTGWFS
101: EALLDTLRLR VAVRFVSVFP EPGFEDVFKS IQEEFERSEK IQTFKETHKP SLVKHKEPTK GSEDMEKFKS TNDDVDVIVN EYGDDEDLDE EEEEDEEELY
201: VPTADDEISI DSHGYLDTEN SSRTYLQGLF DSFPTSEPGL YGDFAVDYGE FQIYEEESDE SLYSIDDNDG EEEEDDDALS LASSPLLLSP DLYLQFASFQ
301: QPLGTMSDRS SRSIYVGNLP GDIRESEIED LFYKYGRIVD IELKVPPRPP CYCFIEFEHP RDAKDAVDGR DGYNFDGCRL RVELSHGGRG QSSGDRRGGY
401: GGGGGYRGGG GGGGGGGGSA RFGVSRHSEF RVIVRGLPSS ASWQDLKDHM RKAGDVCFAE VTRDRDGAYG VVDYTNYDDM KYAIRKLDDT EFKNPWARGY
501: IRVKKYESSQ SRSPSRSRSR SRSRGRDRSR SRSISRSKSP RKDMSKSPRR SPARSISKSR SPSPDRKKSP LRSRSRSRSL SKSPAKVYNR Q
101: EALLDTLRLR VAVRFVSVFP EPGFEDVFKS IQEEFERSEK IQTFKETHKP SLVKHKEPTK GSEDMEKFKS TNDDVDVIVN EYGDDEDLDE EEEEDEEELY
201: VPTADDEISI DSHGYLDTEN SSRTYLQGLF DSFPTSEPGL YGDFAVDYGE FQIYEEESDE SLYSIDDNDG EEEEDDDALS LASSPLLLSP DLYLQFASFQ
301: QPLGTMSDRS SRSIYVGNLP GDIRESEIED LFYKYGRIVD IELKVPPRPP CYCFIEFEHP RDAKDAVDGR DGYNFDGCRL RVELSHGGRG QSSGDRRGGY
401: GGGGGYRGGG GGGGGGGGSA RFGVSRHSEF RVIVRGLPSS ASWQDLKDHM RKAGDVCFAE VTRDRDGAYG VVDYTNYDDM KYAIRKLDDT EFKNPWARGY
501: IRVKKYESSQ SRSPSRSRSR SRSRGRDRSR SRSISRSKSP RKDMSKSPRR SPARSISKSR SPSPDRKKSP LRSRSRSRSL SKSPAKVYNR Q
001: MADYQHVIPI HADIAQQKKR KWMDVDPLTG KSDLMGLADE DVMMLLPQFF APKDIPDNVA LKPPATSGPK KKDDAATQNF YEIDVGPVFA IDFSVKEIPK
101: KLKWEDFVSR SSNHWQWQVA VSALFEERPI WTRDSVVQRL LDKGLKCTHH MLNRFLLRAA YYFSSGPFLR FWIKRGYDPR NDPESRVYQR MEFRVPPELR
201: GYCDANATNN SKPSWNDICA FKLFPFKCQT FLQLFELDDE YIQREIRKPP KQTTCSHKSG WFSEAMLDTL RLRVAVRFVS VFPETGFEDV FKSIQEEFER
301: SEKVQIQKET LKPSLVKHRE ATKGSEDMET FKSVNENVDA NVNEDGEDEN LDDEDEDEEE EEELDMAAGD NEISLDSHGY LDTENSSRTY LQGLFDSFPS
401: SEPNLYGDFA VDDGSDGEFQ IYEEESEGLY SIDDDHNDDD EEEDDDD
101: KLKWEDFVSR SSNHWQWQVA VSALFEERPI WTRDSVVQRL LDKGLKCTHH MLNRFLLRAA YYFSSGPFLR FWIKRGYDPR NDPESRVYQR MEFRVPPELR
201: GYCDANATNN SKPSWNDICA FKLFPFKCQT FLQLFELDDE YIQREIRKPP KQTTCSHKSG WFSEAMLDTL RLRVAVRFVS VFPETGFEDV FKSIQEEFER
301: SEKVQIQKET LKPSLVKHRE ATKGSEDMET FKSVNENVDA NVNEDGEDEN LDDEDEDEEE EEELDMAAGD NEISLDSHGY LDTENSSRTY LQGLFDSFPS
401: SEPNLYGDFA VDDGSDGEFQ IYEEESEGLY SIDDDHNDDD EEEDDDD
Arabidopsis Description
Transcription factor IIIC, subunit 5 [Source:UniProtKB/TrEMBL;Acc:F4IXX4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.