CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72313
CDX76092
CDX81371
CDX83484
CDX84503
CDY02941
CDY07084
CDY10512
CDY13444
CDY14697
CDY22251
CDY23361
CDY24176
CDY30756
CDY43799
CDY44222
CDY47646
CDY53849
CDY57127
CDY59084
CDY72459

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37340.1	CDY47646	AT1G23860.1	18674533
AT2G37340.1	CDY59084	AT1G23860.1	18674533
AT2G37340.1	CDY10512	AT1G53720.1	16497658
AT2G37340.1	CDY72459	AT1G53720.1	16497658
AT2G37340.1	CDX83484	AT2G43370.1	15987817
AT2G37340.1	CDY14697	AT2G43370.1	15987817
AT2G37340.1	CDY22251	AT2G43370.1	15987817
AT2G37340.1	CDY23361	AT2G43370.1	15987817
AT2G37340.1	CDY44222	AT2G43370.1	15987817
AT2G37340.1	CDY07084	AT3G13570.1	18674533
AT2G37340.1	CDY24176	AT3G13570.1	18674533
AT2G37340.1	CDX81371	AT3G50670.1	18674533
AT2G37340.1	CDY30756	AT3G50670.1	18674533
AT2G37340.1	CDY53849	AT3G50670.1	18674533
AT2G37340.1	CDY57127	AT3G50670.1	18674533
AT2G37340.1	CDX76092	AT3G55460.1	18674533
AT2G37340.1	CDY02941	AT3G55460.1	18674533
AT2G37340.1	CDX76092	AT3G55460.1	21798944
AT2G37340.1	CDY02941	AT3G55460.1	21798944
AT2G37340.1	CDX72313	AT4G31580.1	18674533
AT2G37340.1	CDY13444	AT4G31580.1	18674533
AT2G37340.1	CDX84503	AT5G64200.2	18674533
AT2G37340.1	CDY43799	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G37340.1	Thale cress	nucleus	90.78	91.72
CDY46773	Canola	nucleus	98.29	91.14
CDX78183	Canola	nucleus	79.52	82.33
CDX73550	Canola	nucleus	78.84	81.34
CDY07586	Canola	mitochondrion, nucleus	79.52	80.9
CDY52755	Canola	mitochondrion, nucleus	79.52	80.07
KRH67593	Soybean	endoplasmic reticulum	68.26	69.69
KRG95876	Soybean	nucleus	67.92	69.34
PGSC0003DMT400060435	Potato	nucleus	66.21	64.67
CDX80835	Canola	nucleus	58.36	64.53
CDY41599	Canola	nucleus	62.46	63.76
CDY11223	Canola	nucleus	57.0	63.5
KRH67596	Soybean	nucleus	64.51	63.21
CDY44717	Canola	nucleus	63.14	62.71
KRG95883	Soybean	nucleus	62.8	61.95
EES00292	Sorghum	nucleus	59.39	58.78
KXG21152	Sorghum	nucleus	62.12	58.33
VIT_08s0040g02860.t01	Wine grape	nucleus	52.56	57.89
GSMUA_Achr10P...	Banana	nucleus	64.16	57.85
Solyc05g054920.2.1	Tomato	nucleus	66.21	57.57
Solyc09g005980.2.1	Tomato	nucleus	61.43	57.14
PGSC0003DMT400061471	Potato	nucleus	60.75	56.51
Os05t0120100-01	Rice	mitochondrion, nucleus	62.12	56.35
Os01t0155600-01	Rice	nucleus	61.77	55.86
GSMUA_Achr6P15450_001	Banana	nucleus	63.48	55.19
Os03t0285900-01	Rice	nucleus	62.12	55.15
TraesCS1A01G108000.2	Wheat	nucleus	51.54	54.32
TraesCS1B01G065900.2	Wheat	nucleus	62.8	53.96
TraesCS1D01G111000.2	Wheat	nucleus	52.56	53.66
Zm00001d011004_P008	Maize	nucleus	61.77	53.55
TraesCS1D01G051900.1	Wheat	nucleus	62.46	53.51
TraesCS1A01G049700.1	Wheat	nucleus	62.12	53.22
KXG21387	Sorghum	nucleus	48.12	53.21
EES18924	Sorghum	nucleus	61.77	53.08
Zm00001d011005_P005	Maize	nucleus	63.82	52.97
TraesCS1B01G130200.3	Wheat	nucleus	51.88	52.96
TraesCS3B01G151100.1	Wheat	nucleus	58.36	52.94
TraesCS3D01G134500.1	Wheat	nucleus	58.02	52.47
HORVU1Hr1G024060.21	Barley	nucleus	52.9	51.84
TraesCS3A01G308000.1	Wheat	nucleus	58.36	51.35
KRH42195	Soybean	endoplasmic reticulum	46.76	49.82
HORVU1Hr1G009950.7	Barley	nucleus, plastid	62.12	49.46
Zm00001d037543_P001	Maize	nucleus	30.03	48.89
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	59.73	47.17
OQU77498	Sorghum	nucleus	16.72	44.14
KRH58317	Soybean	nucleus	32.42	43.38
Os05t0162600-01	Rice	nucleus	46.42	40.24
Zm00001d035551_P007	Maize	nucleus	45.73	34.18
CDY66028	Canola	cytosol	29.35	33.99
CDX91319	Canola	nucleus	34.47	33.78
CDY22050	Canola	nucleus	34.47	32.69
CDY50385	Canola	nucleus	34.13	32.47
CDX97264	Canola	nucleus	33.79	32.46
CDX86974	Canola	nucleus	28.33	30.86
CDY00202	Canola	nucleus	28.67	30.55
CDX68538	Canola	nucleus	28.67	29.79
CDY08133	Canola	cytosol	27.65	28.03
CDY05936	Canola	nucleus	27.99	27.8
KXG21391	Sorghum	nucleus	37.88	27.75
CDX94214	Canola	cytosol	18.77	27.5
CDY45333	Canola	nucleus, plastid, vacuole	10.92	26.23
CDX95008	Canola	nucleus	27.99	25.87
CDY61855	Canola	nucleus	29.35	14.55

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:A0A078CSK5	EnsemblPlants:CDX79732	ProteinID:CDX79732
ProteinID:CDX79732.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00132551001
InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF21	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI0003E67F30	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

BnaC03g20680D

Coordinates

chrLK031818:-:1963859..1966421

Molecular Weight (calculated)

33373.2 Da

IEP (calculated)

10.527

GRAVY (calculated)

-1.507

Length

293 amino acids

Sequence
(BLAST)

001: MPRYDDRYGN TRLYVGHLSS RTRTRDLERL FNRYGRVRDV DMKRDYAFVE FSDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDYD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSRS LSRSRSYSRS RSPVKRRERS EEERSRSPKR
201: MEDSLSPRGR DRSPIMDDEG SPRIIDGSPP PSPKLEKPAG SDHDGGSSPQ DNGNGRNTVA SPVVGRDSPR EDRSPVDDDY EANRASPRGS ESP

Best Arabidopsis Sequence Match ( AT2G37340.1 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP

Arabidopsis Description

RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.