CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72313
CDX79732
CDX95008
CDY13444
CDY46773
CDY47646
CDY59084
CDY66028

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50670.1	CDX95008	AT1G09140.1	21798944
AT3G50670.1	CDY66028	AT1G09140.1	21798944
AT3G50670.1	CDY47646	AT1G23860.1	10593939
AT3G50670.1	CDY59084	AT1G23860.1	10593939
AT3G50670.1	CDY47646	AT1G23860.1	9761791
AT3G50670.1	CDY59084	AT1G23860.1	9761791
AT3G50670.1	CDX79732	AT2G37340.1	18674533
AT3G50670.1	CDY46773	AT2G37340.1	18674533
AT3G50670.1	CDX72313	AT4G31580.1	10593939
AT3G50670.1	CDY13444	AT4G31580.1	10593939
AT3G50670.1	CDX72313	AT4G31580.1	9761791
AT3G50670.1	CDY13444	AT4G31580.1	9761791

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53849	Canola	nucleus, plastid	26.27	53.43
CDX81371	Canola	nucleus	53.25	52.49
CDY57127	Canola	plasma membrane	53.01	52.13
VIT_04s0023g01580.t01	Wine grape	nucleus	43.37	50.56
GSMUA_Achr7P00820_001	Banana	cytosol	10.6	45.36
GSMUA_Achr10P...	Banana	nucleus	40.96	43.59
AT3G50670.1	Thale cress	nucleus	43.61	42.39
TraesCS1B01G146600.1	Wheat	nucleus	35.9	41.62
GSMUA_Achr7P08090_001	Banana	nucleus	40.72	40.82
Solyc02g085420.2.1	Tomato	nucleus	43.13	37.45
PGSC0003DMT400038558	Potato	nucleus	42.65	37.26
KRH28659	Soybean	nucleus	42.17	36.31
KRH76798	Soybean	nucleus	41.45	35.76
Os10t0115600-02	Rice	nucleus	37.59	33.69
EER95096	Sorghum	nucleus	37.83	32.44
HORVU1Hr1G046870.5	Barley	nucleus	37.11	32.02
TraesCS1A01G176500.1	Wheat	nucleus	36.87	31.81
TraesCS1D01G162500.1	Wheat	nucleus	36.87	31.81
TraesCS1B01G203600.1	Wheat	nucleus	36.63	31.6
TraesCS1D01G124800.1	Wheat	nucleus	36.39	31.52
EER91800	Sorghum	nucleus	36.87	31.48
TraesCS1A01G128600.1	Wheat	nucleus	36.14	31.18
HORVU1Hr1G030660.5	Barley	nucleus	35.18	29.32
Zm00001d014343_P002	Maize	nucleus	37.59	27.76
KRH69931	Soybean	cytosol, mitochondrion, nucleus	12.29	26.15
CDX83484	Canola	nucleus	16.14	20.81
CDY14697	Canola	cytosol, mitochondrion	8.92	20.44
CDY23361	Canola	endoplasmic reticulum	12.53	20.39
CDY44222	Canola	nucleus	15.66	20.38
CDY22251	Canola	cytosol	6.51	17.53

Protein Annotations

MapMan:16.4.1.1.1	Gene3D:3.30.70.330	GO:A0A078GZ31	UniProt:A0A078GZ31	EnsemblPlants:CDY30756	ProteinID:CDY30756
ProteinID:CDY30756.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0030619
EnsemblPlantsGene:GSBRNA2T00046170001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR13952	PANTHER:PTHR13952:SF5	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0004EF43C2	SEG:seg	InterPro:snRNP70_RRM	:	:	:

Description

BnaC07g16560DBnaC07g16560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZ31]

Coordinates

chrLK032260:-:16109..20454

Molecular Weight (calculated)

47731.0 Da

IEP (calculated)

10.697

GRAVY (calculated)

-0.984

Length

415 amino acids

Sequence
(BLAST)

001: MGDLNDPFMR NQNAAVQART KVQNRSNVLQ LKLVRHANNM ITSEFRIPNE TGPVSLYIQK MHPDGPSRCL IQMLHLGVFR FFISSMHPDE SAPLEFQPPP
101: EQRKCPPYTG MAQYSMLHLS RMLKLLHRKG REFINHDWRK VEKAAEDLKN YDPNNDPNAS GDPYKTLFVA RLNYETSDSK IKREFEAYGP IKQVRLYLNT
201: RNIKAAYKQG DGKKIDGRRV PVDVERGRTV PNWRPRRLGS GLGTTRVPGE KITGEEEQKQ QQPSQGRSSR SEEPRAREDR EKSRDRGKER EREQSRERSH
301: ERSRDRPRES HREDKHHRDR GRERESRRAE EIETVVHGIT IVTGVGKGKG STRAASMTTM VGDLVREKRS MRGEVTQTVM ISRATVTDMM IVSTSGQSVL
401: SRMSMVLMAD AIVFP

Best Arabidopsis Sequence Match ( AT3G50670.1 )
(BLAST)

001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR

Arabidopsis Description

RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.