CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87987
EER94870
EES00292
EES07659
EES18924
KXG21152
KXG21387
KXG21391
KXG21829
KXG32406
OQU77498
OQU85289

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50670.1	EER94870	AT1G02840.1	18674533
AT3G50670.1	KXG21829	AT1G02840.1	18674533
AT3G50670.1	KXG32406	AT1G02840.1	18674533
AT3G50670.1	EER94870	AT1G09140.1	21798944
AT3G50670.1	KXG21829	AT1G09140.1	21798944
AT3G50670.1	KXG32406	AT1G09140.1	21798944
AT3G50670.1	EES00292	AT2G37340.1	18674533
AT3G50670.1	EES18924	AT2G37340.1	18674533
AT3G50670.1	KXG21152	AT2G37340.1	18674533
AT3G50670.1	KXG21387	AT2G37340.1	18674533
AT3G50670.1	KXG21391	AT2G37340.1	18674533
AT3G50670.1	OQU77498	AT2G37340.1	18674533
AT3G50670.1	EER87987	AT4G31580.1	10593939
AT3G50670.1	EES07659	AT4G31580.1	10593939
AT3G50670.1	OQU85289	AT4G31580.1	10593939
AT3G50670.1	EER87987	AT4G31580.1	9761791
AT3G50670.1	EES07659	AT4G31580.1	9761791
AT3G50670.1	OQU85289	AT4G31580.1	9761791

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95096	Sorghum	nucleus	88.48	88.84
Os10t0115600-02	Rice	nucleus	74.49	78.19
Zm00001d014343_P002	Maize	nucleus	89.09	77.05
TraesCS1B01G146600.1	Wheat	nucleus	54.73	74.3
TraesCS1D01G124800.1	Wheat	nucleus	70.16	71.19
TraesCS1A01G128600.1	Wheat	nucleus	69.34	70.06
HORVU1Hr1G030660.5	Barley	nucleus	68.31	66.67
VIT_04s0023g01580.t01	Wine grape	nucleus	48.35	66.01
GSMUA_Achr10P...	Banana	nucleus	51.65	64.36
GSMUA_Achr7P08090_001	Banana	nucleus	52.67	61.84
Bra012098.1-P	Field mustard	cytosol	21.6	58.99
CDY53849	Canola	nucleus, plastid	23.87	56.86
CDX81371	Canola	nucleus	47.53	54.87
Solyc02g085420.2.1	Tomato	nucleus	53.5	54.39
CDY57127	Canola	plasma membrane	46.91	54.03
PGSC0003DMT400038558	Potato	nucleus	52.47	53.68
AT3G50670.1	Thale cress	nucleus	46.91	53.4
KRH28659	Soybean	nucleus	52.67	53.11
KRH76798	Soybean	nucleus	52.06	52.6
GSMUA_Achr7P00820_001	Banana	cytosol	10.49	52.58
CDY30756	Canola	nucleus, plastid	31.48	36.87
KRH69931	Soybean	cytosol, mitochondrion, nucleus	13.99	34.87
EER97037	Sorghum	nucleus	19.75	21.97

Protein Annotations

MapMan:16.4.1.1.1	Gene3D:3.30.70.330	EntrezGene:8083888	UniProt:C5WPV4	EnsemblPlants:EER91800	ProteinID:EER91800
ProteinID:EER91800.1	GO:GO:0000243	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005685	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030619
GO:GO:0071004	GO:GO:0071011	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF12220	PFscan:PS50102	PANTHER:PTHR13952	PANTHER:PTHR13952:SF5	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	EnsemblPlantsGene:SORBI_3001G274200	SUPFAM:SSF54928	unigene:Sbi.20561	InterPro:U1snRNP70_N	UniParc:UPI0001A822B3
RefSeq:XP_002464802.1	SEG:seg	InterPro:snRNP70_RRM	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:53103763..53108893

Molecular Weight (calculated)

57417.7 Da

IEP (calculated)

9.662

GRAVY (calculated)

-1.866

Length

486 amino acids

Sequence
(BLAST)

001: MGDYGHGGGQ MRGNPDSRTR GQGQRTNVQQ LKLMGQIHPT GLTPNLLKLF EPRPPLEYKP PLEKRKLPAY TGMAQFVSHF AKSEDPEYAP PVPKCETRAE
101: KKARIRNNKL EQGAAKIAEE LQKYDPQSDP NATGDPYKTL FVARLNYETS EQRIKREFEG YGPIKWVRLV TEKDTSKPRG YAFIEYVHTR DMKSAYKQAD
201: GRKVDNKRVL VDVERGRTVP NWRPRRLGGG LGSSRMGGAD ADKKDSTRGQ QHGGRPRSEE PRRDDRRADR DREKSRERVH EREREERTRE RSHDRTRDRD
301: SRDEKHHHRD RERTRDRERG KDRERDHGRD RDRDRRDRDR DRGRDRERDH ARSHDRHRER GRDRGERDYE RTHERERGHM HERDADYGNG GTKHDKNLSS
401: YGQDYGYGQY EQHKGHDAYG YGQDGRRHET EHSKRHEHEY YRVDSYGKME ANYQMQPNNA EPEGPEEGEA YEEGDYQYHQ AGESHE

Best Arabidopsis Sequence Match ( AT3G50670.1 )
(BLAST)

001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR

Arabidopsis Description

RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.