CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72313
CDX79732
CDX95008
CDY13444
CDY46773
CDY47646
CDY59084
CDY66028

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50670.1	CDX95008	AT1G09140.1	21798944
AT3G50670.1	CDY66028	AT1G09140.1	21798944
AT3G50670.1	CDY47646	AT1G23860.1	10593939
AT3G50670.1	CDY59084	AT1G23860.1	10593939
AT3G50670.1	CDY47646	AT1G23860.1	9761791
AT3G50670.1	CDY59084	AT1G23860.1	9761791
AT3G50670.1	CDX79732	AT2G37340.1	18674533
AT3G50670.1	CDY46773	AT2G37340.1	18674533
AT3G50670.1	CDX72313	AT4G31580.1	10593939
AT3G50670.1	CDY13444	AT4G31580.1	10593939
AT3G50670.1	CDX72313	AT4G31580.1	9761791
AT3G50670.1	CDY13444	AT4G31580.1	9761791

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012098.1-P	Field mustard	cytosol	68.63	78.65
VIT_04s0023g01580.t01	Wine grape	nucleus	66.67	38.2
CDX81371	Canola	nucleus	76.96	37.29
CDY57127	Canola	plasma membrane	76.96	37.2
AT3G50670.1	Thale cress	nucleus	72.55	34.66
GSMUA_Achr10P...	Banana	nucleus	62.75	32.82
TraesCS1B01G146600.1	Wheat	nucleus	56.86	32.4
GSMUA_Achr7P08090_001	Banana	nucleus	60.78	29.95
KRH76798	Soybean	nucleus	67.16	28.48
KRH28659	Soybean	nucleus	66.67	28.22
PGSC0003DMT400038558	Potato	nucleus	63.24	27.16
Solyc02g085420.2.1	Tomato	nucleus	63.24	26.99
CDY30756	Canola	nucleus, plastid	53.43	26.27
Os10t0115600-02	Rice	nucleus	57.84	25.49
HORVU1Hr1G046870.5	Barley	nucleus	57.84	24.53
TraesCS1A01G176500.1	Wheat	nucleus	57.35	24.32
TraesCS1D01G162500.1	Wheat	nucleus	57.35	24.32
TraesCS1D01G124800.1	Wheat	nucleus	56.86	24.22
TraesCS1B01G203600.1	Wheat	nucleus	56.86	24.12
TraesCS1A01G128600.1	Wheat	nucleus	56.86	24.12
EER91800	Sorghum	nucleus	56.86	23.87
EER95096	Sorghum	nucleus	56.37	23.76
HORVU1Hr1G030660.5	Barley	nucleus	56.86	23.29
Zm00001d014343_P002	Maize	nucleus	56.37	20.46
CDY22251	Canola	cytosol	12.75	16.88
CDY14697	Canola	cytosol, mitochondrion	14.22	16.02
CDY23361	Canola	endoplasmic reticulum	17.16	13.73
CDY44222	Canola	nucleus	16.18	10.34
CDX83484	Canola	nucleus	16.18	10.25
GSMUA_Achr7P00820_001	Banana	cytosol	0.98	2.06
KRH69931	Soybean	cytosol, mitochondrion, nucleus	0.49	0.51

Protein Annotations

MapMan:16.4.1.1.1	Gene3D:3.30.70.330	GO:A0A078IWT9	UniProt:A0A078IWT9	EnsemblPlants:CDY53849	ProteinID:CDY53849
ProteinID:CDY53849.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00011543001	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF12220	PANTHER:PTHR13952	PANTHER:PTHR13952:SF5
InterPro:RBD_domain_sf	InterPro:RRM_dom	SUPFAM:SSF54928	InterPro:U1snRNP70_N	UniParc:UPI0004EF037B	SEG:seg

Description

BnaA07g37440DBnaA07g37440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWT9]

Coordinates

chrLK033243:-:30897..32159

Molecular Weight (calculated)

23298.8 Da

IEP (calculated)

9.306

GRAVY (calculated)

-0.749

Length

204 amino acids

Sequence
(BLAST)

001: MGDMNEPFMR NQNAAVQART KVQNRSNVLQ LKLMGQSHPT GLTPNLLKLF EPRPPLEFQP PPDKRKCPPY TGMAQYVSHF AEHGDPEYAP PKPEVETAAQ
101: KRERIHKLRL EKGVEKAAED LKNYYPNNDP NASGDPYKTL FVARLNYETS ESKIKREFEA YGPIKQVCIS HHSLTGSVRI FEMASRSHVS LCNMFDFTFR
201: SLGF

Best Arabidopsis Sequence Match ( AT3G50670.2 )
(BLAST)

001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVGYS EHSLAGSVRI CVMASLSRAL CSICFILSTK
201: VFQG

Arabidopsis Description

RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.