Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- endoplasmic reticulum 1
- cytosol 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G43370.1 | CDY47646 | AT1G23860.1 | 15987817 |
| AT2G43370.1 | CDY59084 | AT1G23860.1 | 15987817 |
| AT2G43370.1 | CDY20328 | AT2G24590.1 | 21798944 |
| AT2G43370.1 | CDY45585 | AT2G24590.1 | 21798944 |
| AT2G43370.1 | CDX79732 | AT2G37340.1 | 15987817 |
| AT2G43370.1 | CDY46773 | AT2G37340.1 | 15987817 |
| AT2G43370.1 | CDY07084 | AT3G13570.1 | 15987817 |
| AT2G43370.1 | CDY24176 | AT3G13570.1 | 15987817 |
| AT2G43370.1 | CDY08148 | AT3G49580.1 | 21798944 |
| AT2G43370.1 | CDX76092 | AT3G55460.1 | 15987817 |
| AT2G43370.1 | CDY02941 | AT3G55460.1 | 15987817 |
| AT2G43370.1 | CDX81436 | AT3G61860.1 | 15987817 |
| AT2G43370.1 | CDY22958 | AT3G61860.1 | 15987817 |
| AT2G43370.1 | CDX72718 | AT4G39050.1 | 21798944 |
| AT2G43370.1 | CDX90305 | AT4G39050.1 | 21798944 |
| AT2G43370.1 | CDY12116 | AT4G39050.1 | 21798944 |
| AT2G43370.1 | CDY22394 | AT4G39050.1 | 21798944 |
| AT2G43370.1 | CDX80461 | AT5G24660.1 | 21798944 |
| AT2G43370.1 | CDY05402 | AT5G24660.1 | 21798944 |
| AT2G43370.1 | CDY05452 | AT5G24660.1 | 21798944 |
| AT2G43370.1 | CDY69515 | AT5G24660.1 | 21798944 |
| AT2G43370.1 | CDX96185 | AT5G53060.1 | 21798944 |
| AT2G43370.1 | CDY27030 | AT5G53060.1 | 21798944 |
| AT2G43370.1 | CDY49453 | AT5G53060.1 | 21798944 |
| AT2G43370.1 | CDY56908 | AT5G53060.1 | 21798944 |
| AT2G43370.1 | CDY14351 | AT5G53800.1 | 21798944 |
| AT2G43370.1 | CDY20218 | AT5G53800.1 | 21798944 |
| AT2G43370.1 | CDY02176 | AT5G61010.1 | 21798944 |
| AT2G43370.1 | CDY23090 | AT5G61010.1 | 21798944 |
| AT2G43370.1 | CDX84503 | AT5G64200.2 | 15987817 |
| AT2G43370.1 | CDY43799 | AT5G64200.2 | 15987817 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22251 | Canola | cytosol | 56.91 | 66.88 |
| CDY23361 | Canola | endoplasmic reticulum | 58.01 | 41.18 |
| CDY44222 | Canola | nucleus | 64.09 | 36.36 |
| CDX83484 | Canola | nucleus | 64.09 | 36.02 |
| GSMUA_Achr8P09080_001 | Banana | nucleus | 51.93 | 34.06 |
| AT2G43370.1 | Thale cress | nucleus | 60.22 | 32.73 |
| VIT_05s0102g00080.t01 | Wine grape | nucleus | 55.8 | 29.71 |
| KRH46935 | Soybean | nucleus | 52.49 | 29.05 |
| KRH01744 | Soybean | nucleus | 53.59 | 27.95 |
| Solyc09g098390.2.1 | Tomato | nucleus | 51.93 | 26.48 |
| PGSC0003DMT400055636 | Potato | nucleus | 49.72 | 25.57 |
| Os09t0513700-01 | Rice | nucleus | 50.83 | 24.53 |
| TraesCS5D01G304800.1 | Wheat | nucleus | 53.59 | 23.15 |
| TraesCS5A01G298000.1 | Wheat | nucleus | 52.49 | 21.35 |
| EER97037 | Sorghum | nucleus | 50.83 | 21.05 |
| TraesCS5B01G297000.2 | Wheat | nucleus | 52.49 | 20.21 |
| HORVU5Hr1G078170.27 | Barley | nucleus | 45.3 | 17.75 |
| CDY53849 | Canola | nucleus, plastid | 16.02 | 14.22 |
| Zm00001d021137_P002 | Maize | nucleus | 37.57 | 13.91 |
| CDX81371 | Canola | nucleus | 26.52 | 11.4 |
| CDY57127 | Canola | plasma membrane | 26.52 | 11.37 |
| CDY30756 | Canola | nucleus, plastid | 20.44 | 8.92 |
Protein Annotations
| MapMan:16.4.4.1.1 | Gene3D:3.30.70.330 | GO:A0A078FPA0 | UniProt:A0A078FPA0 | EnsemblPlants:CDY14697 | ProteinID:CDY14697 |
| ProteinID:CDY14697.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00084496001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR13952 |
| PANTHER:PTHR13952:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EDBCB2 |
Description
BnaC05g19540DBnaC05g19540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPA0]
Coordinates
chrLK032046:+:351463..352362
Molecular Weight (calculated)
20717.9 Da
IEP (calculated)
9.001
GRAVY (calculated)
-0.351
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRVNTAKLR ACGWSDTLVK ALQLLCKCVD YTLCIKLMSD GGNRVFYARS YHPIQAGSID GTNVAAHDNG VRRALLCYST GPYDPFDDSK VAGDPYFTSH
101: LITEDTLREV KCIKYGKVKR LCLIRHIVTG ASRGYAFVEY ETEKEMHRAY KDAHHSFIDG REIIVDYNRQ QLIHGWRIPR R
101: LITEDTLREV KCIKYGKVKR LCLIRHIVTG ASRGYAFVEY ETEKEMHRAY KDAHHSFIDG REIIVDYNRQ QLIHGWRIPR R
001: MSGGGNNVVN KVFYATSYHP IQAGSIDGTD VAPHDNGVRR ALLCYNAGLY DPSGDSKAVG DPYCTLFVGR LSHHTTEDTL REVMSKYGRI KNLRLVRHIV
101: TGASRGYGFV EYETEKEMLR AYEDAHHSLI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RDRPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EEYYREKSSV EREEEFKERS SLRSYHSHRS SAHTHSSHRR RSKDREECSR EESRSDRKER ARGMEDRYGD NKGEVSGSKR
301: SKRSEEDRSR KRHKHLPSHH HRRSYSQDHH SSD
101: TGASRGYGFV EYETEKEMLR AYEDAHHSLI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RDRPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EEYYREKSSV EREEEFKERS SLRSYHSHRS SAHTHSSHRR RSKDREECSR EESRSDRKER ARGMEDRYGD NKGEVSGSKR
301: SKRSEEDRSR KRHKHLPSHH HRRSYSQDHH SSD
Arabidopsis Description
SNRNP35U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:Q8VY74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.