Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g098390.2.1 | Tomato | nucleus | 88.07 | 87.32 |
| GSMUA_Achr8P09080_001 | Banana | nucleus | 52.84 | 67.39 |
| KRH46935 | Soybean | nucleus | 52.56 | 56.57 |
| CDX83484 | Canola | nucleus | 51.7 | 56.52 |
| Bra000304.1-P | Field mustard | nucleus | 51.14 | 56.07 |
| VIT_05s0102g00080.t01 | Wine grape | nucleus | 53.69 | 55.59 |
| CDY44222 | Canola | nucleus | 50.28 | 55.49 |
| KRH01744 | Soybean | nucleus | 53.12 | 53.89 |
| AT2G43370.1 | Thale cress | nucleus | 50.57 | 53.45 |
| CDY22251 | Canola | cytosol | 23.3 | 53.25 |
| CDY14697 | Canola | cytosol, mitochondrion | 25.57 | 49.72 |
| CDY23361 | Canola | endoplasmic reticulum | 34.94 | 48.24 |
| Os09t0513700-01 | Rice | nucleus | 49.72 | 46.67 |
| TraesCS5D01G304800.1 | Wheat | nucleus | 50.28 | 42.24 |
| EER97037 | Sorghum | nucleus | 49.72 | 40.05 |
| TraesCS5A01G298000.1 | Wheat | nucleus | 50.0 | 39.55 |
| TraesCS5B01G297000.2 | Wheat | nucleus | 50.57 | 37.87 |
| HORVU5Hr1G078170.27 | Barley | nucleus | 47.16 | 35.93 |
| Zm00001d021137_P002 | Maize | nucleus | 40.62 | 29.24 |
| PGSC0003DMT400038558 | Potato | nucleus | 26.42 | 19.58 |
Protein Annotations
| EntrezGene:102599679 | MapMan:16.4.4.1.1 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0034693 |
| InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M1BY90 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | EnsemblPlantsGene:PGSC0003DMG400021605 |
| PGSC:PGSC0003DMG400021605 | EnsemblPlants:PGSC0003DMT400055636 | PFscan:PS50102 | PANTHER:PTHR13952 | PANTHER:PTHR13952:SF6 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295E9DC | RefSeq:XP_006364676.1 | SEG:seg |
| InterPro:snRNP35_RRM | : | : | : | : | : |
Description
U1 small nuclear ribonucleoprotein 70 kD [Source:PGSC_GENE;Acc:PGSC0003DMG400021605]
Coordinates
chr9:-:61209036..61214059
Molecular Weight (calculated)
40855.4 Da
IEP (calculated)
10.588
GRAVY (calculated)
-1.307
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGEEQKERR STANLNSVFY AESYHPIQAG SIDGTDILPH DNAIYRALLC SNAGLYDPFG DPKAIGDPYS TLFVGHLSQF TTEQTLLKEM NKYGRVKNLR
101: IVRHIVTGAS RGYAFVEFET DRDMRRAYTD AHHKVIDDSE IIVDYNRQRL MSGWIPRRLG GGLGGKKESG QLRFGGRERP FRAPLRPIPW DDLKRLGIPP
201: PPEGRYMSRF QAPSPPRRAR SLEDARDSSH KHVKRSNHSH RQDRSISRER SSGRQERSMD KEDFSHRQRT HGRKRGDRRS PNHDHSSDRS SMDRNRHSRK
301: RQKSSRDRHD MKSPSLDHSS DETSTYREER RQSHNARDDR WSPRTDDPFG DT
101: IVRHIVTGAS RGYAFVEFET DRDMRRAYTD AHHKVIDDSE IIVDYNRQRL MSGWIPRRLG GGLGGKKESG QLRFGGRERP FRAPLRPIPW DDLKRLGIPP
201: PPEGRYMSRF QAPSPPRRAR SLEDARDSSH KHVKRSNHSH RQDRSISRER SSGRQERSMD KEDFSHRQRT HGRKRGDRRS PNHDHSSDRS SMDRNRHSRK
301: RQKSSRDRHD MKSPSLDHSS DETSTYREER RQSHNARDDR WSPRTDDPFG DT
001: MSGGGNNVVN KVFYATSYHP IQAGSIDGTD VAPHDNGVRR ALLCYNAGLY DPSGDSKAVG DPYCTLFVGR LSHHTTEDTL REVMSKYGRI KNLRLVRHIV
101: TGASRGYGFV EYETEKEMLR AYEDAHHSLI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RDRPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EEYYREKSSV EREEEFKERS SLRSYHSHRS SAHTHSSHRR RSKDREECSR EESRSDRKER ARGMEDRYGD NKGEVSGSKR
301: SKRSEEDRSR KRHKHLPSHH HRRSYSQDHH SSD
101: TGASRGYGFV EYETEKEMLR AYEDAHHSLI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RDRPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EEYYREKSSV EREEEFKERS SLRSYHSHRS SAHTHSSHRR RSKDREECSR EESRSDRKER ARGMEDRYGD NKGEVSGSKR
301: SKRSEEDRSR KRHKHLPSHH HRRSYSQDHH SSD
Arabidopsis Description
SNRNP35U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:Q8VY74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.