Factsheet for PGSC0003DMT400008772

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001105
PGSC0003DMT400006576
PGSC0003DMT400012953
PGSC0003DMT400013629
PGSC0003DMT400020258
PGSC0003DMT400021078
PGSC0003DMT400027500
PGSC0003DMT400027505
PGSC0003DMT400028944
PGSC0003DMT400032333
PGSC0003DMT400038984
PGSC0003DMT400039289
PGSC0003DMT400039743
PGSC0003DMT400040750
PGSC0003DMT400046782
PGSC0003DMT400047304
PGSC0003DMT400049840
PGSC0003DMT400051660
PGSC0003DMT400055240
PGSC0003DMT400055506
PGSC0003DMT400059103
PGSC0003DMT400062383
PGSC0003DMT400064434
PGSC0003DMT400073335
PGSC0003DMT400090670
PGSC0003DMT400096763

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39050.1	PGSC0003DMT400027500	AT1G03140.1	21798944
AT4G39050.1	PGSC0003DMT400027505	AT1G03140.1	21798944
AT4G39050.1	PGSC0003DMT400049840	AT1G03140.1	21798944
AT4G39050.1	PGSC0003DMT400006576	AT1G15570.1	21798944
AT4G39050.1	PGSC0003DMT400012953	AT1G55890.1	21798944
AT4G39050.1	PGSC0003DMT400090670	AT2G17670.1	21798944
AT4G39050.1	PGSC0003DMT400013629	AT2G30580.1	21798944
AT4G39050.1	PGSC0003DMT400038984	AT2G30580.1	21798944
AT4G39050.1	PGSC0003DMT400051660	AT2G30580.1	21798944
AT4G39050.1	PGSC0003DMT400055506	AT2G36990.1	21798944
AT4G39050.1	PGSC0003DMT400032333	AT3G15360.1	21798944
AT4G39050.1	PGSC0003DMT400039743	AT3G15360.1	21798944
AT4G39050.1	PGSC0003DMT400064434	AT3G15360.1	21798944
AT4G39050.1	PGSC0003DMT400021078	AT3G60360.1	21798944
AT4G39050.1	PGSC0003DMT400046782	AT4G24680.1	21798944
AT4G39050.1	PGSC0003DMT400047304	AT4G28230.1	21798944
AT4G39050.1	PGSC0003DMT400059103	AT5G05190.1	21798944
AT4G39050.1	PGSC0003DMT400073335	AT5G11090.1	21798944
AT4G39050.1	PGSC0003DMT400096763	AT5G11090.1	21798944
AT4G39050.1	PGSC0003DMT400001105	AT5G22890.1	21798944
AT4G39050.1	PGSC0003DMT400040750	AT5G49210.1	21798944
AT4G39050.1	PGSC0003DMT400020258	AT5G57910.1	21798944
AT4G39050.1	PGSC0003DMT400028944	AT5G57910.1	21798944
AT4G39050.1	PGSC0003DMT400039289	AT5G63350.1	21798944
AT4G39050.1	PGSC0003DMT400062383	AT5G63350.1	21798944
AT4G39050.1	PGSC0003DMT400055240	AT5G67530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g054080.1.1	Tomato	plastid	95.62	43.0
Solyc11g044880.1.1	Tomato	plastid	77.24	34.68
AT4G39050.1	Thale cress	plastid	65.97	29.95
CDY12116	Canola	plastid	64.09	29.72
VIT_03s0038g00350.t01	Wine grape	plastid	68.06	29.61
Bra010714.1-P	Field mustard	plastid	64.93	29.59
CDX90305	Canola	plastid	63.67	29.53
CDY22394	Canola	plastid	63.47	29.32
CDX72718	Canola	plastid	62.21	29.3
Bra031184.1-P	Field mustard	plastid	62.0	27.71
CDX82022	Canola	plastid	61.8	27.64
AT2G21380.2	Thale cress	plastid	60.54	27.41
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plasma membrane	53.65	26.97
Solyc01g110190.2.1	Tomato	plastid	60.13	26.94
Bra033597.1-P	Field mustard	cytosol	64.09	25.18
KXG38192	Sorghum	plastid	54.28	24.79
TraesCS1D01G176100.1	Wheat	plastid	53.44	24.59
TraesCS1B01G202600.1	Wheat	plastid	53.44	24.59
TraesCS1A01G177600.1	Wheat	plastid	53.44	24.59
Os10t0512800-01	Rice	plastid	54.28	24.55
HORVU1Hr1G047110.10	Barley	plastid	53.24	24.4
Zm00001d032464_P008	Maize	plastid	51.77	23.11
Zm00001d013859_P002	Maize	plastid	49.9	22.27
KRH16381	Soybean	cytosol	28.6	20.66
GSMUA_Achr8P11730_001	Banana	plastid	55.32	20.08
PGSC0003DMT400072611	Potato	cytosol	7.52	6.11
PGSC0003DMT400014403	Potato	nucleus	6.26	6.07
PGSC0003DMT400042877	Potato	nucleus	8.35	4.78
PGSC0003DMT400020657	Potato	plastid	1.04	4.39
PGSC0003DMT400049453	Potato	cytosol	8.77	4.01
PGSC0003DMT400057119	Potato	plastid	9.6	3.87
PGSC0003DMT400023094	Potato	cytosol	7.31	3.48
PGSC0003DMT400024240	Potato	cytosol	8.77	3.47
PGSC0003DMT400035325	Potato	plastid	6.68	3.34
PGSC0003DMT400012577	Potato	cytosol	5.43	3.14
PGSC0003DMT400005133	Potato	cytosol, plastid	6.47	3.01
PGSC0003DMT400040181	Potato	cytosol, plastid	6.47	2.94
PGSC0003DMT400078142	Potato	cytosol, plastid	6.05	2.78
PGSC0003DMT400011905	Potato	cytosol, plastid	7.52	2.75
PGSC0003DMT400009519	Potato	nucleus	5.01	2.6
PGSC0003DMT400031343	Potato	nucleus	5.01	2.48
PGSC0003DMT400009131	Potato	cytosol	4.8	2.25
PGSC0003DMT400007659	Potato	cytosol	0.42	0.6

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003774	GO:GO:0003777
GO:GO:0003824	GO:GO:0007018	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	InterPro:IPR001841
InterPro:IPR013083	InterPro:Kinesin-like_fam	UniProt:M0ZV26	PFAM:PF13920	EnsemblPlantsGene:PGSC0003DMG400003410	PGSC:PGSC0003DMG400003410
EnsemblPlants:PGSC0003DMT400008772	PFscan:PS50089	PANTHER:PTHR24115	PANTHER:PTHR24115:SF497	SUPFAM:SSF57850	UniParc:UPI000296EFB0
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Kinesin [Source:PGSC_GENE;Acc:PGSC0003DMG400003410]

Coordinates

chr10:-:45319405..45323898

Molecular Weight (calculated)

54504.1 Da

IEP (calculated)

5.887

GRAVY (calculated)

-0.639

Length

479 amino acids

Sequence
(BLAST)

001: MDLLAEQVKM LSGEIAFSSS TLKRLMEQSV NDPESSRNQI ENLEREIQEK RNQMRMLEQR IVENGEASVS KASLVEMQQT LMKLMTQYSQ TGFELEIKSA
101: DNRILQEELQ NKCSVIKELQ EKIYHLEQQL LAVKAEKSYP SLEQRVSGEY VDELRKKIQF QDIENGKLRL EHVQIVEENS GLHVQNQKLS EEALYAKELA
201: SAAAVELKNL AGEVTKLSLQ NGKLEKELLA AREMLNSRSS IALTGNVGNR KHGENLRTGR RGRISGRGSE IPGVIHDDFD TWDLDPEDLK MELQARKQRE
301: AALEAVLSAK EVVEDEYRKK VEEGKKREAA LENDLANMWV LVAQLKKETG ARHDSRLAAE RQNVEDRLND VKINDITQKE PYLADNLSVN HTTDIAEAPK
401: EEPLVARLKA RMQEMKEKEH RHSGNGDANS HVCKVCFESP TTAMLLPCRH FCLCKSCSLA CFECPICRTK IVDRIFAFT

Best Arabidopsis Sequence Match ( AT4G39050.1 )
(BLAST)

0001: MASSSSRTRS SRPPSPASST SSSHLSNRLI PRSNSTSASS LITSAAGIAS RSMTPSRTFS DSGLIGSGSF GIGSPVPYPS EELLGDPMDD TISSERDSIS
0101: VTVRFRPLSD REYQRGDEVA WYPDGDTLVR HEYNPLTAYA FDKVFGPQAT TIDVYDVAAR PVVKAAMEGV NGTVFAYGVT SSGKTHTMHG DQESPGIIPL
0201: AIKDVFSIIQ DTPGREFLLR VSYLEIYNEV INDLLDPTGQ NLRVREDSQG TYVEGIKEEV VLSPGHALSF IAAGEEHRHV GSNNFNLLSS RSHTIFTLMV
0301: ESSATGDEYD GVIFSQLNLI DLAGSESSKT ETTGLRRKEG SYINKSLLTL GTVIGKLSEG KATHIPYRDS KLTRLLQSSL SGHGHVSLIC TITPASSSSE
0401: ETHNTLKFAS RAKSIEIYAS RNQIIDEKSL IKKYQREIST LKLELDQLRR GMLVGVSHEE LMSLKQQLEE GQVKMQSRLE EEEEAKAALM SRIQKLTKLI
0501: LVSTKNSIPG YSGDIPTHQR SLSAGKDDKF DSLLLESDNL GSPSSTLALL SEGSLGFNHR RSSSKLNDEN SPGAEFTQGV MTPDEIDLLV EQVKMLAGEI
0601: AFSTSTLKRL VDQSVNDPEN SQTQIQNLER EIHEKQRQMR GLEQLIIESG EASIANASLV EMQQKVMSLM TQCNEKSFEL EIKSADNCIL QEQLQEKCTE
0701: NKELHEKVNL LEQRLNAVSS EKSSPSCSNK AVSGEYADEL KKKIQSQEIE NEELKLEHVQ IVEENSGLRV QNQKLAEEAS YAKELASAAA VELKNLASEV
0801: TKLSLQNTKL EKELAAARDL AQTRNPMNGV NRKYNDGARS GRKGRISSSR SSGDEFDAWN LDPEDLKMEL QVRKQREVAL ESALAEKEFI EDEYRKKAEE
0901: AKRREEALEN DLANMWVLVA KLKKDNGALP EPNGTDPGRE LEKSQSHAVL KERQVSSAPR QPEVVVVAKT EETPKEEPLV ARLKARMQEM KEKEMKSQAN
1001: GDANSHICKV CFESPTAAIL LPCRHFCLCK SCSLACSECP ICRTKISDRL FAFPS

Arabidopsis Description

KIN7DKinesin-like protein KIN-7D, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8W5R5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.