Factsheet for PGSC0003DMT400062383

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 2
mitochondrion 2
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
MultiLoc:	cytosol
Plant-mPloc:	extracellular, mitochondrion, nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039289	Potato	nucleus	58.04	26.86
Solyc03g111100.1.1	Tomato	nucleus	56.64	26.13
Bra038626.1-P	Field mustard	plastid	41.26	22.01
KRH54218	Soybean	plastid	36.36	21.14
Bra038625.1-P	Field mustard	cytosol	41.96	20.34
KRH63730	Soybean	plastid	34.97	20.16
Bra019549.1-P	Field mustard	nucleus	35.66	19.77
CDY37923	Canola	nucleus	35.66	19.77
CDY45734	Canola	nucleus	39.16	19.05
AT5G63350.1	Thale cress	nucleus	38.46	18.21
KRH57200	Soybean	plastid	36.36	17.99
AT5G50360.1	Thale cress	nucleus	36.36	17.87
Bra022512.1-P	Field mustard	nucleus	34.97	17.86
PGSC0003DMT400003036	Potato	cytosol	9.09	17.81
AT3G48510.1	Thale cress	cytosol	36.36	17.69
KRH03914	Soybean	plastid	34.97	17.24
CDX68466	Canola	cytosol	35.66	17.0
CDY53329	Canola	cytosol	34.97	16.72
Bra029900.1-P	Field mustard	cytosol	34.97	16.72
PGSC0003DMT400052105	Potato	cytosol	30.07	15.25
CDY56888	Canola	cytosol	27.27	15.18
GSMUA_Achr3P17030_001	Banana	cytosol	30.77	14.86
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	27.97	13.33
TraesCS3B01G247700.1	Wheat	mitochondrion	27.27	13.22
TraesCS3A01G217400.1	Wheat	mitochondrion	27.27	13.13
GSMUA_Achr8P28790_001	Banana	cytosol	26.57	13.1
CDY30747	Canola	cytosol, mitochondrion, nucleus, plastid	39.86	12.72
TraesCS3D01G219400.1	Wheat	mitochondrion	26.57	12.67
EES15909	Sorghum	peroxisome	25.17	10.78
CDX91547	Canola	nucleus	34.97	10.48
Os12t0242500-01	Rice	extracellular	23.78	10.33
Zm00001d023799_P001	Maize	mitochondrion	22.38	10.06
Zm00001d023800_P001	Maize	mitochondrion	22.38	10.06
CDY16370	Canola	plastid	33.57	9.9
Bra029231.1-P	Field mustard	nucleus	39.16	7.83

Protein Annotations

EnsemblPlants:PGSC0003DMT400062383	EnsemblPlantsGene:PGSC0003DMG400024279	PANTHER:PTHR33595	PANTHER:PTHR33595:SF3	PGSC:PGSC0003DMG400024279	SEG:seg
UniParc:UPI000295C9BC	UniProt:M1C904	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024279]

Coordinates

chr12:-:5699817..5703158

Molecular Weight (calculated)

15709.4 Da

IEP (calculated)

7.180

GRAVY (calculated)

-0.483

Length

143 amino acids

Sequence
(BLAST)

001: MYRSFGGNQG NNNDNHNNNG QLQGYGGGGG GGVMFPQPVR VVGSWVKVES VTDAWVEGYG LGRTDEEKLI NLERDCCPGF ISDGLNRVRW ANKAYKAMVG
101: AGAGEVVVWL VMKDDVRLPE SKYTAAEYSS FCVRRPQYSS FWG

Best Arabidopsis Sequence Match ( AT3G48510.1 )
(BLAST)

001: MDGRGGCCIA RYAIGSGPYD LSKADRIMLR FRPIAPKPAS PGGVNPVSSG DSGGGSSDVS FRSASRRKRK CHQLKENGGN AKRCTRRKTS DKPVVHGSAN
101: AVTLSLLPEK PIDLKAAVEK QKRQGPLWLS FKDGGGMLTP AYQTPEIVQR TVVISSCMTV ERVTDAWIDG YGLGRSDEER KMNLVRDTCP GFISDGSGRV
201: TWTNDAYRKM ARDIIPVEEG APEITSGDSF HVIVRLVMRE RPMLTSPGFT CRMKLQYTCQ NRERGSVTVP CDVWRMDVGG GFAWRLDVKA ALCL

Arabidopsis Description

At3g48510 [Source:UniProtKB/TrEMBL;Acc:Q9SMP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.