CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
extracellular 1
mitochondrion 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH09670

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63350.1	KRH09670	AT1G80650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03914	Soybean	plastid	80.97	80.69
KRH54218	Soybean	plastid	43.25	50.81
KRH63730	Soybean	plastid	42.91	50.0
Bra038625.1-P	Field mustard	cytosol	47.06	46.1
Bra038626.1-P	Field mustard	plastid	42.21	45.52
AT5G63350.1	Thale cress	nucleus	46.02	44.04
AT3G48510.1	Thale cress	cytosol	44.29	43.54
CDY45734	Canola	nucleus	43.94	43.2
Bra029900.1-P	Field mustard	cytosol	43.6	42.14
CDY53329	Canola	cytosol	43.6	42.14
CDX68466	Canola	cytosol	43.25	41.67
PGSC0003DMT400039289	Potato	nucleus	44.29	41.42
Solyc03g111100.1.1	Tomato	nucleus	43.94	40.97
CDY37923	Canola	nucleus	33.56	37.6
Bra019549.1-P	Field mustard	nucleus	33.56	37.6
AT5G50360.1	Thale cress	nucleus	37.37	37.11
Bra022512.1-P	Field mustard	nucleus	35.64	36.79
PGSC0003DMT400062383	Potato	cytosol	17.99	36.36
KRH57635	Soybean	plastid	35.64	33.55
GSMUA_Achr3P17030_001	Banana	cytosol	33.56	32.77
KRG94328	Soybean	cytosol	33.91	31.72
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	32.53	31.33
GSMUA_Achr8P28790_001	Banana	cytosol	30.45	30.34
TraesCS3A01G217400.1	Wheat	mitochondrion	30.8	29.97
TraesCS3B01G247700.1	Wheat	mitochondrion	30.1	29.49
TraesCS3D01G219400.1	Wheat	mitochondrion	30.45	29.33
CDY30747	Canola	cytosol, mitochondrion, nucleus, plastid	41.52	26.79
Os12t0242500-01	Rice	extracellular	29.76	26.14
Zm00001d023799_P001	Maize	mitochondrion	28.03	25.47
Zm00001d023800_P001	Maize	mitochondrion	28.03	25.47
EES15909	Sorghum	peroxisome	29.07	25.15
CDY56888	Canola	cytosol	22.15	24.9
CDX91547	Canola	nucleus	35.64	21.59
CDY16370	Canola	plastid	35.29	21.03
Bra029231.1-P	Field mustard	nucleus	39.79	16.08

Protein Annotations

EMBL:ACUP02002816	EnsemblPlants:KRH57200	EnsemblPlantsGene:GLYMA_05G045800	EntrezGene:102662292	PANTHER:PTHR33595	PANTHER:PTHR33595:SF3
ProteinID:KRH57200	ProteinID:KRH57200.1	SEG:seg	UniParc:UPI00023C564B	UniProt:I1K087	MapMan:35.2

Description

hypothetical protein

Coordinates

chr5:-:4077294..4078732

Molecular Weight (calculated)

31955.8 Da

IEP (calculated)

9.284

GRAVY (calculated)

-0.553

Length

289 amino acids

Sequence
(BLAST)

001: MDLRGGCCIA RYVPGASHVS TVDKIMLRFR PIAPKPAAGA TASDGSSSET SDAFLRNGNT KRKYVRDSNY TSKRRICRRK NSNSSPEQKQ KQTTPAVTLP
101: LLPETPDRKD FPAKDLTPSP VRNNNNNNSS NKSKKLNIIN KNVPVWVSFA NRSLTMMGGW CSCVTVESLT DTWVEGEWLG STDEERRVNL SKDTCPGFIS
201: DGYGRVTGTN EAYEKMMEGD EGQGPVLLVN KVNTVVPHAS FTCLVRVVQY ACGRERSSLT VPCDVWRMDS GGFAWRLDVE TALSLRLGY

Best Arabidopsis Sequence Match ( AT5G63350.1 )
(BLAST)

001: MDGRGGCCIA RYGGYGGRYG LSKADRIMLR FRPIAPKPAS DGGSVSLTGK SGSTTTTSGG SSDLSGKSGR GKRKYQKDCS GGNSRRCNKK KRDLSGDTAT
101: TTAVTLSLLP ETPEKRVFPD LNAFPVEKQK RNGPLWLSFN GGGEILTPYK TAEISRRTVV VSSCVTVERV TDAWIDGYGL GETNQERKMN LVEDTCPGFI
201: SDGVGRVTWT NEAYKKMARE DINIPMEEGV PEDISYDNFH VNVRLVMKER PMLTYPAFTC RVRLQYTCQD RERGSVTVPC DVWRMDGGGF AWRLDVKAAL
301: CL

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FGW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.