CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37923	Canola	nucleus	51.75	51.55
CDX68466	Canola	cytosol	48.25	41.33
AT3G48510.1	Thale cress	cytosol	45.53	39.8
CDY53329	Canola	cytosol	45.53	39.13
CDY45734	Canola	nucleus	42.02	36.73
KRH54218	Soybean	plastid	27.24	28.46
PGSC0003DMT400062383	Potato	cytosol	15.18	27.27
KRH63730	Soybean	plastid	26.07	27.02
KRH57200	Soybean	plastid	24.9	22.15
KRH03914	Soybean	plastid	24.9	22.07
CDY58582	Canola	cytosol	24.12	22.06
Solyc03g111100.1.1	Tomato	nucleus	26.07	21.61
CDY30747	Canola	cytosol, mitochondrion, nucleus, plastid	37.35	21.43
PGSC0003DMT400039289	Potato	nucleus	25.68	21.36
CDX83671	Canola	cytosol	22.96	20.92
CDY34167	Canola	cytosol	22.18	20.58
CDY13694	Canola	cytosol	22.57	20.57
CDY36383	Canola	cytosol, plastid	21.79	20.22
CDY52703	Canola	cytosol, plastid	21.4	19.86
GSMUA_Achr8P28790_001	Banana	cytosol	20.23	17.93
CDY36382	Canola	cytosol, nucleus, plastid	21.4	17.86
CDY52704	Canola	cytosol, nucleus, plastid	21.01	17.42
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	18.29	15.67
GSMUA_Achr3P17030_001	Banana	cytosol	17.51	15.2
CDX91547	Canola	nucleus	28.02	15.09
CDY16370	Canola	plastid	28.4	15.05
Zm00001d023800_P001	Maize	mitochondrion	17.51	14.15
Zm00001d023799_P001	Maize	mitochondrion	17.51	14.15
EES15909	Sorghum	peroxisome	18.29	14.07
TraesCS3A01G217400.1	Wheat	mitochondrion	15.56	13.47
TraesCS3D01G219400.1	Wheat	mitochondrion	15.56	13.33
TraesCS3B01G247700.1	Wheat	mitochondrion	15.18	13.22
Os12t0242500-01	Rice	extracellular	14.79	11.55

Protein Annotations

EnsemblPlants:CDY56888	EnsemblPlantsGene:GSBRNA2T00020233001	PANTHER:PTHR33595	PANTHER:PTHR33595:SF3	ProteinID:CDY56888	ProteinID:CDY56888.1
UniParc:UPI0004EE2AC7	UniProt:A0A078J1A6	MapMan:35.2	:	:	:

Description

BnaC03g75280DBnaC03g75280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1A6]

Coordinates

chrLK033527:+:48039..49040

Molecular Weight (calculated)

28559.1 Da

IEP (calculated)

5.883

GRAVY (calculated)

-0.202

Length

257 amino acids

Sequence
(BLAST)

001: MISLKVIASC FDFVPSLLDQ PPTTAAEESP YPAERAVPEA PTFPLDERGN VSRRRTVLPL GAHGGDALVT LSLIYIPDTG QSAFTDPKLS VASAEKQKRQ
101: GPFWLSFSDG GGMITPTYQS VEVMRRTVVI SSCMTVERVT DAWNDGYGLG RSDEERKMNL VRDTCPGFIS DGSEGAPENK SGDSFHVIVR LVMRERPMLT
201: YTAFTCRVTL QFTPSRCLAT CGEWTMEVLR GSSTLRPLCA FDREIYITYW YRTVRSV

Best Arabidopsis Sequence Match ( AT3G48510.1 )
(BLAST)

001: MDGRGGCCIA RYAIGSGPYD LSKADRIMLR FRPIAPKPAS PGGVNPVSSG DSGGGSSDVS FRSASRRKRK CHQLKENGGN AKRCTRRKTS DKPVVHGSAN
101: AVTLSLLPEK PIDLKAAVEK QKRQGPLWLS FKDGGGMLTP AYQTPEIVQR TVVISSCMTV ERVTDAWIDG YGLGRSDEER KMNLVRDTCP GFISDGSGRV
201: TWTNDAYRKM ARDIIPVEEG APEITSGDSF HVIVRLVMRE RPMLTSPGFT CRMKLQYTCQ NRERGSVTVP CDVWRMDVGG GFAWRLDVKA ALCL

Arabidopsis Description

At3g48510 [Source:UniProtKB/TrEMBL;Acc:Q9SMP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.