CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019549.1-P	Field mustard	nucleus	100.0	100.0
CDX68466	Canola	cytosol	71.71	61.67
CDY53329	Canola	cytosol	67.05	57.86
AT3G48510.1	Thale cress	cytosol	65.89	57.82
CDY56888	Canola	cytosol	51.55	51.75
CDY45734	Canola	nucleus	56.59	49.66
KRH63730	Soybean	plastid	35.66	37.1
KRH54218	Soybean	plastid	34.88	36.59
PGSC0003DMT400062383	Potato	cytosol	19.77	35.66
KRH57200	Soybean	plastid	37.6	33.56
KRH03914	Soybean	plastid	37.6	33.45
CDY58582	Canola	cytosol	33.33	30.61
CDY30747	Canola	cytosol, mitochondrion, nucleus, plastid	52.71	30.36
Solyc03g111100.1.1	Tomato	nucleus	34.88	29.03
PGSC0003DMT400039289	Potato	nucleus	34.11	28.48
CDX83671	Canola	cytosol	31.01	28.37
CDY13694	Canola	cytosol	30.62	28.01
CDY34167	Canola	cytosol	29.46	27.44
CDY52703	Canola	cytosol, plastid	29.46	27.44
CDY36383	Canola	cytosol, plastid	29.07	27.08
GSMUA_Achr3P17030_001	Banana	cytosol	29.07	25.34
GSMUA_Achr8P28790_001	Banana	cytosol	28.29	25.17
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	27.91	24.0
CDY36382	Canola	cytosol, nucleus, plastid	27.52	23.05
CDY52704	Canola	cytosol, nucleus, plastid	27.13	22.58
CDX91547	Canola	nucleus	40.31	21.8
CDY16370	Canola	plastid	38.76	20.62
TraesCS3B01G247700.1	Wheat	mitochondrion	22.87	20.0
TraesCS3D01G219400.1	Wheat	mitochondrion	23.26	20.0
TraesCS3A01G217400.1	Wheat	mitochondrion	22.87	19.87
Os12t0242500-01	Rice	extracellular	22.87	17.93
Zm00001d023800_P001	Maize	mitochondrion	22.09	17.92
Zm00001d023799_P001	Maize	mitochondrion	22.09	17.92
EES15909	Sorghum	peroxisome	22.48	17.37

Protein Annotations

EnsemblPlants:CDY37923	EnsemblPlantsGene:GSBRNA2T00064927001	PANTHER:PTHR33595	PANTHER:PTHR33595:SF3	ProteinID:CDY37923	ProteinID:CDY37923.1
SEG:seg	UniParc:UPI000253EFFD	UniProt:A0A078HM43	MapMan:35.2	:	:

Description

BnaA06g18940DBnaA06g18940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HM43]

Coordinates

chrLK032411:+:287087..287863

Molecular Weight (calculated)

28796.4 Da

IEP (calculated)

9.860

GRAVY (calculated)

-0.636

Length

258 amino acids

Sequence
(BLAST)

001: MLRFRPIAPK PTSDYGCGGK PVSSGESFSG SSNVSFRGKR KCQQTENGGS ARRCTRRKKL EKTVAHGGEA KVTLSLLPER PGQSAFTDMK LSVASAEKQK
101: RQGPFWLSLS DGGGMITQTY QSVEVMGRTV VISSCMTVER VTDAWNDGYG LGRSDEERKM NLVRDTCPGF ISDGSGRVTW TNEAYRKMAR DNIRVKEGAP
201: ENKSGESFHV IVRLVMRERP MLTYTAFTCR MTLQFTCQDR ERCSVTVPCD VWRMDDGR

Best Arabidopsis Sequence Match ( AT3G48510.1 )
(BLAST)

001: MDGRGGCCIA RYAIGSGPYD LSKADRIMLR FRPIAPKPAS PGGVNPVSSG DSGGGSSDVS FRSASRRKRK CHQLKENGGN AKRCTRRKTS DKPVVHGSAN
101: AVTLSLLPEK PIDLKAAVEK QKRQGPLWLS FKDGGGMLTP AYQTPEIVQR TVVISSCMTV ERVTDAWIDG YGLGRSDEER KMNLVRDTCP GFISDGSGRV
201: TWTNDAYRKM ARDIIPVEEG APEITSGDSF HVIVRLVMRE RPMLTSPGFT CRMKLQYTCQ NRERGSVTVP CDVWRMDVGG GFAWRLDVKA ALCL

Arabidopsis Description

At3g48510 [Source:UniProtKB/TrEMBL;Acc:Q9SMP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.