CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34167	Canola	cytosol	85.77	87.0
CDY13694	Canola	cytosol	82.21	81.91
CDX83671	Canola	cytosol	80.43	80.14
AT3G27250.1	Thale cress	cytosol	72.6	72.34
CDY36383	Canola	cytosol, plastid	56.23	57.04
CDY52703	Canola	cytosol, plastid	55.52	56.32
PGSC0003DMT400003036	Potato	cytosol	12.1	46.58
VIT_14s0171g00360.t01	Wine grape	nucleus	39.5	39.64
KRH57635	Soybean	plastid	43.06	39.41
KRG94328	Soybean	cytosol	41.28	37.54
Solyc02g093890.1.1	Tomato	cytosol	34.88	35.64
Solyc02g068030.1.1	Tomato	cytosol	34.88	35.0
PGSC0003DMT400052105	Potato	cytosol	34.52	34.4
CDY45734	Canola	nucleus	35.94	34.35
CDY53329	Canola	cytosol	35.59	33.44
CDY37923	Canola	nucleus	30.61	33.33
CDX68466	Canola	cytosol	35.23	33.0
CDY52704	Canola	cytosol, nucleus, plastid	32.03	29.03
GSMUA_Achr8P28790_001	Banana	cytosol	29.89	28.97
CDY36382	Canola	cytosol, nucleus, plastid	31.67	28.9
GSMUA_Achr3P17030_001	Banana	cytosol	29.18	27.7
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	29.54	27.67
CDY56888	Canola	cytosol	22.06	24.12
TraesCS3D01G219400.1	Wheat	mitochondrion	23.84	22.33
TraesCS3B01G247700.1	Wheat	mitochondrion	22.78	21.69
TraesCS3A01G217400.1	Wheat	mitochondrion	22.78	21.55
CDY30747	Canola	cytosol, mitochondrion, nucleus, plastid	33.81	21.21
Zm00001d023799_P001	Maize	mitochondrion	23.84	21.07
Zm00001d023800_P001	Maize	mitochondrion	23.84	21.07
EES15909	Sorghum	peroxisome	24.91	20.96
CDX91547	Canola	nucleus	33.81	19.92
Os12t0242500-01	Rice	extracellular	23.13	19.76
CDY16370	Canola	plastid	32.38	18.76

Protein Annotations

EnsemblPlants:CDY58582	EnsemblPlantsGene:GSBRNA2T00024863001	PANTHER:PTHR33595	PANTHER:PTHR33595:SF4	ProteinID:CDY58582	ProteinID:CDY58582.1
UniParc:UPI0004EEDF88	UniProt:A0A078J614	MapMan:35.2	:	:	:

Description

BnaC02g48140DBnaC02g48140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J614]

Coordinates

chrLK033680:+:36758..38727

Molecular Weight (calculated)

31619.2 Da

IEP (calculated)

5.055

GRAVY (calculated)

-0.584

Length

281 amino acids

Sequence
(BLAST)

001: MNQDEWLGTL RYAGKAQDKV SLDTLMLRYR PIAPKPTTGQ PCDAGDNNKN SYNLSKRTKR KYVRVSKNNS TTCRGKTRSD LPDDREPTGV VTLQLMPEKS
101: DLTSDCTPSD PMVKTITGEE TRETNTWTMF NGGGTAEGET WVETRVTVES VTGVCDGSSS FHGVKCTDVE MVDNLSKDTC PAFVSDASNR VVWVNEAYRR
201: NVSGEDPSSL SSLPDVMVWL VMEESTMAMY CNYRAFTCRV RMQYTWQEAN YTKTVPCDVW KMEFGGFAWR LDTTAALTLW L

Best Arabidopsis Sequence Match ( AT3G27250.1 )
(BLAST)

001: MDQDDWLGTL RYAGKAQDKV SVDALMLRYR PIAPKPTTGQ PCGVADNNNN SSYGMSKRTK RKYVRVSKNN KGTCRGKSRS DLSDDREQTD VVTLQLLPEK
101: SDISGEYSPL DQDSLDPSVK SIIGEETQET NTWGMFNGSV TAEMETWVTV ESVTSVCEGS LSSHAVGITD VEIVDNLGKD TCPAFVSDGS NRVVWVNEAY
201: RRNVSGDDST ASVSPEVVVW LVAEEATAAM HCNYQAFTCR VRMQYTWKET KYTKTVPCDV WKMEFGGFAW RLDTTAALTL WL

Arabidopsis Description

At3g27250 [Source:UniProtKB/TrEMBL;Acc:Q9LK28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.