CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52703	Canola	cytosol, plastid	97.47	97.47
AT5G40800.1	Thale cress	cytosol	80.14	81.62
CDY13694	Canola	cytosol	59.57	58.51
CDX83671	Canola	cytosol	58.48	57.45
CDY34167	Canola	cytosol	57.04	57.04
CDY58582	Canola	cytosol	57.04	56.23
PGSC0003DMT400003036	Potato	cytosol	12.27	46.58
VIT_14s0171g00360.t01	Wine grape	nucleus	37.18	36.79
KRH57635	Soybean	plastid	40.43	36.48
KRG94328	Soybean	cytosol	39.35	35.28
Solyc02g068030.1.1	Tomato	cytosol	33.94	33.57
PGSC0003DMT400052105	Potato	cytosol	33.57	32.98
Solyc02g093890.1.1	Tomato	cytosol	31.77	32.0
CDY53329	Canola	cytosol	33.57	31.1
CDX68466	Canola	cytosol	32.13	29.67
CDY45734	Canola	nucleus	31.41	29.59
CDY37923	Canola	nucleus	27.08	29.07
CDY52704	Canola	cytosol, nucleus, plastid	31.05	27.74
CDY36382	Canola	cytosol, nucleus, plastid	30.32	27.27
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	27.8	25.67
GSMUA_Achr3P17030_001	Banana	cytosol	26.35	24.66
GSMUA_Achr8P28790_001	Banana	cytosol	25.63	24.48
TraesCS3B01G247700.1	Wheat	mitochondrion	23.47	22.03
CDY56888	Canola	cytosol	20.22	21.79
TraesCS3D01G219400.1	Wheat	mitochondrion	23.1	21.33
TraesCS3A01G217400.1	Wheat	mitochondrion	22.02	20.54
CDY30747	Canola	cytosol, mitochondrion, nucleus, plastid	32.13	19.87
Zm00001d023799_P001	Maize	mitochondrion	22.38	19.5
Zm00001d023800_P001	Maize	mitochondrion	22.38	19.5
CDX91547	Canola	nucleus	32.85	19.08
EES15909	Sorghum	peroxisome	22.38	18.56
Os12t0242500-01	Rice	extracellular	22.02	18.54
CDY16370	Canola	plastid	31.05	17.73

Protein Annotations

EnsemblPlants:CDY36383	EnsemblPlantsGene:GSBRNA2T00060434001	PANTHER:PTHR33595	PANTHER:PTHR33595:SF4	ProteinID:CDY36383	ProteinID:CDY36383.1
UniParc:UPI0004EEDD55	UniProt:A0A078HHX6	MapMan:35.2	:	:	:

Description

BnaC04g32910DBnaC04g32910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHX6]

Coordinates

chrLK032374:-:288835..289705

Molecular Weight (calculated)

31117.6 Da

IEP (calculated)

5.839

GRAVY (calculated)

-0.490

Length

277 amino acids

Sequence
(BLAST)

001: MDQDHELWRT LRCASKAQDK TSVDTLMLKY RPIAPKPTTT GQPFVGSTST TRTKRKYVRV SKNNKATCRS KDDVRSSSTD PENGREDLVT LQLMPERSTP
101: LSLDLNNFDP TVKTIIGDET CRTGTWLKFN GGEDAVHQVP VETWVTVESV NGGSASHAVG CTDEEIAEAI DKDTRPAFIS DGSNRVVMVN ESYRKTVTGD
201: CGFGGEPSSL LPEVIVWLVV DQTATFYEYR TFTCKVRLEY TWRETKYVKT VPCDVWKMEF GGFAWRLDTT AALTLWL

Best Arabidopsis Sequence Match ( AT5G40800.1 )
(BLAST)

001: MDQDHELWRT LRCAGKAQDK TSVDTLMLKY RPIAPKPTTT GQPLVGDTSS TRRTKRKYVR VSKNNKATCR SKTNGFRSSS TDPENGREDI VTLQLLPERS
101: TPLSLDHNNL DPTVETINGD ETCNTDTWLK FNGGDDALQQ VPVETWVTVE SVNSGLVSHA VGLTDEELTY ALDKDTCPGF ISDGSNRVVM VNEAYRRIVT
201: GDGGFGREVI VWLVVDQTAT FCDYRTFTCK VRMEYTWRET KYTKTLPCDV WKMEFGGFAW RLDTTAALTL WL

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FKS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.