Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36383 | Canola | cytosol, plastid | 81.62 | 80.14 |
| Bra025545.1-P | Field mustard | cytosol, plastid | 80.88 | 79.42 |
| CDY52703 | Canola | cytosol, plastid | 80.51 | 79.06 |
| AT3G27250.1 | Thale cress | cytosol | 56.62 | 54.61 |
| PGSC0003DMT400003036 | Potato | cytosol | 12.5 | 46.58 |
| VIT_14s0171g00360.t01 | Wine grape | nucleus | 38.24 | 37.14 |
| KRH57635 | Soybean | plastid | 41.54 | 36.81 |
| PGSC0003DMT400052105 | Potato | cytosol | 37.87 | 36.52 |
| Solyc02g068030.1.1 | Tomato | cytosol | 36.4 | 35.36 |
| KRG94328 | Soybean | cytosol | 40.07 | 35.28 |
| Solyc02g093890.1.1 | Tomato | cytosol | 35.66 | 35.27 |
| AT5G50360.1 | Thale cress | nucleus | 34.56 | 32.3 |
| AT3G48510.1 | Thale cress | cytosol | 34.56 | 31.97 |
| AT5G40790.1 | Thale cress | cytosol | 32.35 | 29.04 |
| AT5G63350.1 | Thale cress | nucleus | 31.62 | 28.48 |
| GSMUA_Achr8P28790_001 | Banana | cytosol | 28.68 | 26.9 |
| GSMUA_Achr3P17030_001 | Banana | cytosol | 28.31 | 26.01 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, peroxisome | 28.68 | 26.0 |
| TraesCS3B01G247700.1 | Wheat | mitochondrion | 23.53 | 21.69 |
| TraesCS3D01G219400.1 | Wheat | mitochondrion | 23.53 | 21.33 |
| TraesCS3A01G217400.1 | Wheat | mitochondrion | 22.43 | 20.54 |
| Zm00001d023799_P001 | Maize | mitochondrion | 22.43 | 19.18 |
| Zm00001d023800_P001 | Maize | mitochondrion | 22.43 | 19.18 |
| Os12t0242500-01 | Rice | extracellular | 22.43 | 18.54 |
| EES15909 | Sorghum | peroxisome | 22.06 | 17.96 |
Protein Annotations
| ArrayExpress:AT5G40800 | EnsemblPlants:AT5G40800.1 | EnsemblPlantsGene:AT5G40800 | EntrezGene:834080 | GO:GO:0005575 | GO:GO:0008150 |
| PANTHER:PTHR33595 | PANTHER:PTHR33595:SF4 | ProteinID:ABE65571.1 | ProteinID:AED94596.1 | ProteinID:BAB11342.1 | RefSeq:AT5G40800 |
| RefSeq:AT5G40800-TAIR-G | RefSeq:NP_198896.1 | TAIR:AT5G40800 | TAIR:AT5G40800.1 | UniParc:UPI00000A4AC9 | UniProt:Q9FKS6 |
| MapMan:35.2 | : | : | : | : | : |
Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FKS6]
Coordinates
chr5:-:16334581..16336017
Molecular Weight (calculated)
30699.1 Da
IEP (calculated)
5.826
GRAVY (calculated)
-0.536
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQDHELWRT LRCAGKAQDK TSVDTLMLKY RPIAPKPTTT GQPLVGDTSS TRRTKRKYVR VSKNNKATCR SKTNGFRSSS TDPENGREDI VTLQLLPERS
101: TPLSLDHNNL DPTVETINGD ETCNTDTWLK FNGGDDALQQ VPVETWVTVE SVNSGLVSHA VGLTDEELTY ALDKDTCPGF ISDGSNRVVM VNEAYRRIVT
201: GDGGFGREVI VWLVVDQTAT FCDYRTFTCK VRMEYTWRET KYTKTLPCDV WKMEFGGFAW RLDTTAALTL WL
101: TPLSLDHNNL DPTVETINGD ETCNTDTWLK FNGGDDALQQ VPVETWVTVE SVNSGLVSHA VGLTDEELTY ALDKDTCPGF ISDGSNRVVM VNEAYRRIVT
201: GDGGFGREVI VWLVVDQTAT FCDYRTFTCK VRMEYTWRET KYTKTLPCDV WKMEFGGFAW RLDTTAALTL WL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.