Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025546.1-P | Field mustard | cytosol, nucleus, plastid | 54.13 | 52.9 |
| CDY36382 | Canola | cytosol, nucleus, plastid | 52.81 | 51.95 |
| CDY52704 | Canola | cytosol, nucleus, plastid | 53.14 | 51.94 |
| PGSC0003DMT400003036 | Potato | cytosol | 9.9 | 41.1 |
| VIT_14s0171g00360.t01 | Wine grape | nucleus | 35.31 | 38.21 |
| Solyc02g068030.1.1 | Tomato | cytosol | 32.67 | 35.36 |
| KRH57635 | Soybean | plastid | 35.64 | 35.18 |
| AT3G27250.1 | Thale cress | cytosol | 32.67 | 35.11 |
| KRG94328 | Soybean | cytosol | 35.31 | 34.63 |
| Solyc02g093890.1.1 | Tomato | cytosol | 31.02 | 34.18 |
| PGSC0003DMT400052105 | Potato | cytosol | 30.69 | 32.98 |
| AT5G40800.1 | Thale cress | cytosol | 29.04 | 32.35 |
| AT5G63350.1 | Thale cress | nucleus | 30.36 | 30.46 |
| GSMUA_Achr8P28790_001 | Banana | cytosol | 28.71 | 30.0 |
| AT5G50360.1 | Thale cress | nucleus | 28.71 | 29.9 |
| AT3G48510.1 | Thale cress | cytosol | 28.71 | 29.59 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, peroxisome | 28.38 | 28.67 |
| GSMUA_Achr3P17030_001 | Banana | cytosol | 27.72 | 28.38 |
| TraesCS3D01G219400.1 | Wheat | mitochondrion | 23.1 | 23.33 |
| TraesCS3B01G247700.1 | Wheat | mitochondrion | 22.44 | 23.05 |
| TraesCS3A01G217400.1 | Wheat | mitochondrion | 21.45 | 21.89 |
| Zm00001d023799_P001 | Maize | mitochondrion | 21.78 | 20.75 |
| Zm00001d023800_P001 | Maize | mitochondrion | 21.78 | 20.75 |
| Os12t0242500-01 | Rice | extracellular | 21.45 | 19.76 |
| EES15909 | Sorghum | peroxisome | 21.45 | 19.46 |
Protein Annotations
| ArrayExpress:AT5G40790 | EnsemblPlants:AT5G40790.1 | EnsemblPlantsGene:AT5G40790 | EntrezGene:834079 | GO:GO:0008150 | PANTHER:PTHR33595 |
| PANTHER:PTHR33595:SF4 | ProteinID:ABE65570.1 | ProteinID:AED94595.1 | ProteinID:BAB11341.1 | ProteinID:OAO94565.1 | RefSeq:AT5G40790 |
| RefSeq:AT5G40790-TAIR-G | RefSeq:NP_198895.1 | SEG:seg | TAIR:AT5G40790 | TAIR:AT5G40790.1 | UniParc:UPI000009FD18 |
| UniProt:A0A178ULN9 | UniProt:Q9FKS7 | MapMan:35.2 | : | : | : |
Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FKS7]
Coordinates
chr5:-:16330041..16331276
Molecular Weight (calculated)
34440.2 Da
IEP (calculated)
8.193
GRAVY (calculated)
-0.574
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MHGNGKQCQA SICDGATDQD KTVISKIMQR FRPIAPKPAV GESSDDTNSD RFLGRNRRSK RKYVRVRDKK NSSGSNNKKD ITGKKNGCDR GNIKTDLDKK
101: IDGDDRTDIV TLQLLPEKDR DIGNNGDKAG EFCSDLSDMD PKKSLYNSII GLSSSFDRKV VESWLTVECV SDTCTDLGWY HILEQLGRMD QAEERVMRML
201: EVDTCPWLVS DGSNRVCWVN RAYRRMMGAP DVDVIRVWLV VAMDLMEEIA CMVELYGAVT CRVRVRYEPS TWRKMTVPCD VWRIRSGGFA WRLDVESALR
301: LGM
101: IDGDDRTDIV TLQLLPEKDR DIGNNGDKAG EFCSDLSDMD PKKSLYNSII GLSSSFDRKV VESWLTVECV SDTCTDLGWY HILEQLGRMD QAEERVMRML
201: EVDTCPWLVS DGSNRVCWVN RAYRRMMGAP DVDVIRVWLV VAMDLMEEIA CMVELYGAVT CRVRVRYEPS TWRKMTVPCD VWRIRSGGFA WRLDVESALR
301: LGM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.