Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G226200.1 | |
| TraesCS5B01G224700.3 | |
| TraesCS5D01G233400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G63350.1 | TraesCS5A01G226200.1 | AT1G80650.1 | 21798944 |
| AT5G63350.1 | TraesCS5B01G224700.3 | AT1G80650.1 | 21798944 |
| AT5G63350.1 | TraesCS5D01G233400.1 | AT1G80650.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G247700.1 | Wheat | mitochondrion | 87.54 | 88.14 |
| TraesCS3D01G219400.1 | Wheat | mitochondrion | 83.84 | 83.0 |
| Os12t0242500-01 | Rice | extracellular | 57.91 | 52.28 |
| Zm00001d023800_P001 | Maize | mitochondrion | 50.84 | 47.48 |
| Zm00001d023799_P001 | Maize | mitochondrion | 50.84 | 47.48 |
| EES15909 | Sorghum | peroxisome | 50.84 | 45.21 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, peroxisome | 37.71 | 37.33 |
| PGSC0003DMT400003036 | Potato | cytosol | 8.75 | 35.62 |
| GSMUA_Achr3P17030_001 | Banana | cytosol | 34.01 | 34.12 |
| GSMUA_Achr8P28790_001 | Banana | cytosol | 33.0 | 33.79 |
| KRH54218 | Soybean | plastid | 26.6 | 32.11 |
| KRH63730 | Soybean | plastid | 26.6 | 31.85 |
| KRH57200 | Soybean | plastid | 29.97 | 30.8 |
| KRH03914 | Soybean | plastid | 29.63 | 30.34 |
| Solyc03g111100.1.1 | Tomato | nucleus | 30.98 | 29.68 |
| Bra029900.1-P | Field mustard | cytosol | 29.29 | 29.1 |
| CDY53329 | Canola | cytosol | 29.29 | 29.1 |
| CDX68466 | Canola | cytosol | 29.29 | 29.0 |
| AT5G63350.1 | Thale cress | nucleus | 28.96 | 28.48 |
| PGSC0003DMT400039289 | Potato | nucleus | 29.29 | 28.16 |
| AT3G48510.1 | Thale cress | cytosol | 27.61 | 27.89 |
| PGSC0003DMT400062383 | Potato | cytosol | 13.13 | 27.27 |
| CDY45734 | Canola | nucleus | 26.94 | 27.21 |
| VIT_14s0171g00360.t01 | Wine grape | nucleus | 25.59 | 27.14 |
| Bra038625.1-P | Field mustard | cytosol | 26.94 | 27.12 |
| AT5G50360.1 | Thale cress | nucleus | 26.26 | 26.8 |
| Bra038626.1-P | Field mustard | plastid | 23.91 | 26.49 |
| KRH57635 | Soybean | plastid | 26.6 | 25.73 |
| Solyc02g068030.1.1 | Tomato | cytosol | 23.91 | 25.36 |
| Bra025261.1-P | Field mustard | cytosol | 23.91 | 25.27 |
| KRG94328 | Soybean | cytosol | 26.26 | 25.24 |
| CDY13694 | Canola | cytosol | 23.23 | 24.47 |
| CDX83671 | Canola | cytosol | 23.23 | 24.47 |
| Bra022512.1-P | Field mustard | nucleus | 22.9 | 24.29 |
| CDY34167 | Canola | cytosol | 22.22 | 23.83 |
| Bra032992.1-P | Field mustard | cytosol | 22.22 | 23.83 |
| AT3G27250.1 | Thale cress | cytosol | 22.22 | 23.4 |
| Bra019549.1-P | Field mustard | nucleus | 19.87 | 22.87 |
| CDY37923 | Canola | nucleus | 19.87 | 22.87 |
| CDY58582 | Canola | cytosol | 21.55 | 22.78 |
| PGSC0003DMT400052105 | Potato | cytosol | 21.55 | 22.7 |
| AT5G40800.1 | Thale cress | cytosol | 20.54 | 22.43 |
| Solyc02g093890.1.1 | Tomato | cytosol | 20.54 | 22.18 |
| Bra025545.1-P | Field mustard | cytosol, plastid | 20.54 | 22.02 |
| CDY52703 | Canola | cytosol, plastid | 20.54 | 22.02 |
| CDY36383 | Canola | cytosol, plastid | 20.54 | 22.02 |
| CDY52704 | Canola | cytosol, nucleus, plastid | 22.56 | 21.61 |
| AT5G40790.1 | Thale cress | cytosol | 21.89 | 21.45 |
| Bra025546.1-P | Field mustard | cytosol, nucleus, plastid | 22.22 | 21.29 |
| CDY36382 | Canola | cytosol, nucleus, plastid | 21.89 | 21.1 |
| CDY30747 | Canola | cytosol, mitochondrion, nucleus, plastid | 25.59 | 16.96 |
| CDY56888 | Canola | cytosol | 13.47 | 15.56 |
| CDX91547 | Canola | nucleus | 23.23 | 14.47 |
| CDY16370 | Canola | plastid | 23.23 | 14.23 |
| Bra029231.1-P | Field mustard | nucleus | 25.59 | 10.63 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G217400.1 | EnsemblPlantsGene:TraesCS3A01G217400 | PANTHER:PTHR33595 | PANTHER:PTHR33595:SF3 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr3A:-:396610382..396611275
Molecular Weight (calculated)
30694.0 Da
IEP (calculated)
9.904
GRAVY (calculated)
-0.070
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MMERKGGCCL APRYAAGAQA GQGWHMGRAM LKFRPIAPKP AVMAPAPMPA VPAGKGKGRR KAVAGPGGTG RRGRKPKKQA TVAAPTTQKL DYVQDKPLSS
101: PSSSSSGMTS VDSSPPPPLP LMPVLPAEEG FGGAAPVANL APAHVAGLVL PPQALRQAVS WVTVEDVTGI WRDGEAPYAA ACGGDEAPTF VSDQCGRVTW
201: TNVAFNRAVS GREDVDAAMA PSAAASEVRV VLAAKDGAPV PAWGSCAGFT CRVRVPYACP RRGSLVAPCD VWRLDAGGYL WRLDLQATLS LSLGGFI
101: PSSSSSGMTS VDSSPPPPLP LMPVLPAEEG FGGAAPVANL APAHVAGLVL PPQALRQAVS WVTVEDVTGI WRDGEAPYAA ACGGDEAPTF VSDQCGRVTW
201: TNVAFNRAVS GREDVDAAMA PSAAASEVRV VLAAKDGAPV PAWGSCAGFT CRVRVPYACP RRGSLVAPCD VWRLDAGGYL WRLDLQATLS LSLGGFI
001: MDGRGGCCIA RYGGYGGRYG LSKADRIMLR FRPIAPKPAS DGGSVSLTGK SGSTTTTSGG SSDLSGKSGR GKRKYQKDCS GGNSRRCNKK KRDLSGDTAT
101: TTAVTLSLLP ETPEKRVFPD LNAFPVEKQK RNGPLWLSFN GGGEILTPYK TAEISRRTVV VSSCVTVERV TDAWIDGYGL GETNQERKMN LVEDTCPGFI
201: SDGVGRVTWT NEAYKKMARE DINIPMEEGV PEDISYDNFH VNVRLVMKER PMLTYPAFTC RVRLQYTCQD RERGSVTVPC DVWRMDGGGF AWRLDVKAAL
301: CL
101: TTAVTLSLLP ETPEKRVFPD LNAFPVEKQK RNGPLWLSFN GGGEILTPYK TAEISRRTVV VSSCVTVERV TDAWIDGYGL GETNQERKMN LVEDTCPGFI
201: SDGVGRVTWT NEAYKKMARE DINIPMEEGV PEDISYDNFH VNVRLVMKER PMLTYPAFTC RVRLQYTCQD RERGSVTVPC DVWRMDGGGF AWRLDVKAAL
301: CL
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FGW7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.