Factsheet for Solyc02g093890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052105	Potato	cytosol	78.91	76.95
Solyc02g068030.1.1	Tomato	cytosol	48.0	47.14
VIT_14s0171g00360.t01	Wine grape	nucleus	39.64	38.93
Bra032992.1-P	Field mustard	cytosol	36.73	36.46
CDY34167	Canola	cytosol	36.73	36.46
AT5G40800.1	Thale cress	cytosol	35.27	35.66
CDX83671	Canola	cytosol	36.0	35.11
CDY58582	Canola	cytosol	35.64	34.88
AT3G27250.1	Thale cress	cytosol	35.64	34.75
Bra025261.1-P	Field mustard	cytosol	35.27	34.52
CDY13694	Canola	cytosol	35.27	34.4
KRG94328	Soybean	cytosol	38.55	34.3
KRH57635	Soybean	plastid	37.09	33.22
Solyc03g111100.1.1	Tomato	nucleus	37.09	32.9
CDY52703	Canola	cytosol, plastid	32.36	32.13
Bra025545.1-P	Field mustard	cytosol, plastid	32.36	32.13
CDY36383	Canola	cytosol, plastid	32.0	31.77
AT5G40790.1	Thale cress	cytosol	34.18	31.02
Bra025546.1-P	Field mustard	cytosol, nucleus, plastid	31.27	27.74
CDY52704	Canola	cytosol, nucleus, plastid	30.91	27.42
GSMUA_Achr3P17030_001	Banana	cytosol	29.09	27.03
CDY36382	Canola	cytosol, nucleus, plastid	30.18	26.95
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	27.27	25.0
GSMUA_Achr8P28790_001	Banana	cytosol	25.82	24.48
TraesCS3D01G219400.1	Wheat	mitochondrion	22.91	21.0
TraesCS3B01G247700.1	Wheat	mitochondrion	22.18	20.68
TraesCS3A01G217400.1	Wheat	mitochondrion	22.18	20.54
EES15909	Sorghum	peroxisome	23.64	19.46
Zm00001d023799_P001	Maize	mitochondrion	21.45	18.55
Zm00001d023800_P001	Maize	mitochondrion	21.45	18.55
Os12t0242500-01	Rice	extracellular	21.09	17.63

Protein Annotations

EnsemblPlants:Solyc02g093890.1.1	EnsemblPlantsGene:Solyc02g093890.1	ncoils:Coil	PANTHER:PTHR33595	PANTHER:PTHR33595:SF4	SEG:seg
UniParc:UPI00027688C8	UniProt:K4BDI5	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr2:-:54596113..54596940

Molecular Weight (calculated)

30849.4 Da

IEP (calculated)

9.378

GRAVY (calculated)

-0.347

Length

275 amino acids

Sequence
(BLAST)

001: MDLANTWAGP GYTPTPKDTT LINQMMLRFR PIAPKPVDNS SGPPETHVVA NRRTKRKYVR VKKNKNNKKE KSDGLLDEVV TLQLLPESSG GVKTSPEDRS
101: YPKTINFLVQ LDRSIWINKN ILSIGAPDPS VEIRSPMVVE SWVTVDGLTN TTFVDLSALG STDMEKMMNL QRDTCPGFIS DGLDSVKWVN LAYRRMIDPE
201: EEGGEATEMV VRLVVKEDKR APVLLLLPSF ACIVRIVYTW NKVKQSRTMP CDVWKMDCGG FAWKFDAKAA LSLGR

Best Arabidopsis Sequence Match ( AT3G27250.1 )
(BLAST)

001: MDQDDWLGTL RYAGKAQDKV SVDALMLRYR PIAPKPTTGQ PCGVADNNNN SSYGMSKRTK RKYVRVSKNN KGTCRGKSRS DLSDDREQTD VVTLQLLPEK
101: SDISGEYSPL DQDSLDPSVK SIIGEETQET NTWGMFNGSV TAEMETWVTV ESVTSVCEGS LSSHAVGITD VEIVDNLGKD TCPAFVSDGS NRVVWVNEAY
201: RRNVSGDDST ASVSPEVVVW LVAEEATAAM HCNYQAFTCR VRMQYTWKET KYTKTVPCDV WKMEFGGFAW RLDTTAALTL WL

Arabidopsis Description

At3g27250 [Source:UniProtKB/TrEMBL;Acc:Q9LK28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.