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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • nucleus 2
  • plastid 3
  • cytosol 2
  • extracellular 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, extracellular, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
Plant-mPloc:extracellular, nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY52703 Canola cytosol, plastid 98.92 98.92
AT5G40800.1 Thale cress cytosol 79.42 80.88
Bra025261.1-P Field mustard cytosol 59.93 59.07
Bra032992.1-P Field mustard cytosol 56.68 56.68
PGSC0003DMT400003036 Potato cytosol 12.27 46.58
VIT_14s0171g00360.t01 Wine grape nucleus 36.82 36.43
KRH57635 Soybean plastid 40.07 36.16
KRG94328 Soybean cytosol 38.99 34.95
Bra038626.1-P Field mustard plastid 32.49 33.58
PGSC0003DMT400052105 Potato cytosol 33.57 32.98
Solyc02g068030.1.1 Tomato cytosol 33.21 32.86
Bra022512.1-P Field mustard nucleus 32.85 32.5
Solyc02g093890.1.1 Tomato cytosol 32.13 32.36
Bra038625.1-P Field mustard cytosol 33.94 31.86
Bra029900.1-P Field mustard cytosol 33.57 31.1
Bra019549.1-P Field mustard nucleus 27.08 29.07
Bra025546.1-P Field mustard cytosol, nucleus, plastid 30.32 27.1
GSMUA_AchrUn_... Banana cytosol, nucleus, peroxisome 27.44 25.33
GSMUA_Achr3P17030_001 Banana cytosol 26.35 24.66
GSMUA_Achr8P28790_001 Banana cytosol 25.63 24.48
TraesCS3B01G247700.1 Wheat mitochondrion 23.47 22.03
TraesCS3D01G219400.1 Wheat mitochondrion 23.1 21.33
TraesCS3A01G217400.1 Wheat mitochondrion 22.02 20.54
Zm00001d023799_P001 Maize mitochondrion 22.38 19.5
Zm00001d023800_P001 Maize mitochondrion 22.38 19.5
EES15909 Sorghum peroxisome 22.38 18.56
Os12t0242500-01 Rice extracellular 22.02 18.54
Bra029231.1-P Field mustard nucleus 31.41 12.17
Protein Annotations
EnsemblPlants:Bra025545.1EnsemblPlants:Bra025545.1-PEnsemblPlantsGene:Bra025545PANTHER:PTHR33595PANTHER:PTHR33595:SF4UniParc:UPI0002544EEA
UniProt:M4E9T9MapMan:35.2::::
Description
AT5G40800 (E=3e-131) | unknown protein
Coordinates
chrA04:-:8006307..8007140
Molecular Weight (calculated)
31020.5 Da
IEP (calculated)
6.761
GRAVY (calculated)
-0.507
Length
277 amino acids
Sequence
(BLAST)
001: MDQDHELWRT LRCASKAQDK TSVDSLMLKY RPIAPKPTTT GQPFVGSTST TRTKRKYVRV SKNNKATCRS KNDVRSSSTD PENGREDLVT LQLMPERSTP
101: LSLDLNNFDP TVKTIIGDGT CKTGTWLKFN GGEDAVHQGP VETWVTVESV NGGSASHAVG CTDEEIAEAI DKDTRPAFIS DGSNRVVMVN ESYRKTVTGD
201: YGFGGEPSSL LPEVIVWLVV DQTATFYEYR TFTCKVRLEY TWRETKYVKT VPCDVWKMEF GGFAWRLDTT AALTLWL
Best Arabidopsis Sequence Match ( AT5G40800.1 )
(BLAST)
001: MDQDHELWRT LRCAGKAQDK TSVDTLMLKY RPIAPKPTTT GQPLVGDTSS TRRTKRKYVR VSKNNKATCR SKTNGFRSSS TDPENGREDI VTLQLLPERS
101: TPLSLDHNNL DPTVETINGD ETCNTDTWLK FNGGDDALQQ VPVETWVTVE SVNSGLVSHA VGLTDEELTY ALDKDTCPGF ISDGSNRVVM VNEAYRRIVT
201: GDGGFGREVI VWLVVDQTAT FCDYRTFTCK VRMEYTWRET KYTKTLPCDV WKMEFGGFAW RLDTTAALTL WL
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FKS6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.