Factsheet for VIT_14s0171g00360.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003036	Potato	cytosol	13.57	52.05
Solyc02g068030.1.1	Tomato	cytosol	45.0	45.0
CDY13694	Canola	cytosol	43.57	43.26
CDX83671	Canola	cytosol	43.21	42.91
AT3G27250.1	Thale cress	cytosol	42.86	42.55
Bra025261.1-P	Field mustard	cytosol	42.5	42.35
KRH57635	Soybean	plastid	45.0	41.04
PGSC0003DMT400052105	Potato	cytosol	41.07	40.78
Bra032992.1-P	Field mustard	cytosol	39.29	39.71
CDY34167	Canola	cytosol	39.29	39.71
Solyc02g093890.1.1	Tomato	cytosol	38.93	39.64
CDY58582	Canola	cytosol	39.64	39.5
AT5G40800.1	Thale cress	cytosol	37.14	38.24
KRG94328	Soybean	cytosol	42.14	38.19
CDY36383	Canola	cytosol, plastid	36.79	37.18
CDY52703	Canola	cytosol, plastid	36.79	37.18
Bra025545.1-P	Field mustard	cytosol, plastid	36.43	36.82
AT5G40790.1	Thale cress	cytosol	38.21	35.31
CDY36382	Canola	cytosol, nucleus, plastid	37.86	34.42
CDY52704	Canola	cytosol, nucleus, plastid	37.86	34.19
Bra025546.1-P	Field mustard	cytosol, nucleus, plastid	37.86	34.19
GSMUA_Achr8P28790_001	Banana	cytosol	32.5	31.38
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	33.21	31.0
GSMUA_Achr3P17030_001	Banana	cytosol	32.14	30.41
TraesCS3B01G247700.1	Wheat	mitochondrion	28.21	26.78
TraesCS3D01G219400.1	Wheat	mitochondrion	28.21	26.33
TraesCS3A01G217400.1	Wheat	mitochondrion	27.14	25.59
Os12t0242500-01	Rice	extracellular	26.79	22.8
EES15909	Sorghum	peroxisome	25.71	21.56
Zm00001d023799_P001	Maize	mitochondrion	24.29	21.38
Zm00001d023800_P001	Maize	mitochondrion	24.29	21.38

Protein Annotations

ArrayExpress:VIT_14s0171g00360	EMBL:FN596749	EnsemblPlants:VIT_14s0171g00360.t01	EnsemblPlantsGene:VIT_14s0171g00360	EntrezGene:100249110	EntrezGene:LOC100249110
ncoils:Coil	PANTHER:PTHR33595	PANTHER:PTHR33595:SF4	ProteinID:CCB62232	ProteinID:CCB62232.1	RefSeq:XP_002270738
RefSeq:XP_002270738.1	SEG:seg	unigene:Vvi.24706	unigene:Vvi.25496	UniParc:UPI0002109BE4	UniProt:F6I5L4
wikigene:100249110	wikigene:LOC100249110	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr14:+:26183948..26186681

Molecular Weight (calculated)

31596.8 Da

IEP (calculated)

9.796

GRAVY (calculated)

-0.604

Length

280 amino acids

Sequence
(BLAST)

001: MERCAGGAQD NAIINRIMLR FRPIAPKPAA GGSSSGGSTS ENRNVVVARG RGKRKYVRVR KYNRCRRKKR TAEEEIRDGL EKTVQTLQLL PEKADGSDSP
101: AGASWCNLER SETTKPIRET PPFWLTFNGE NTWSALDRGV VREATMIVVE SWVTVECVRS ACMEGGGLGS TDLERRKNLE GDTCPGLISD GLNRVEWVND
201: AYKRMVSQEI SNGRWPECWV WLVAKEKLPY MYPAFTCRVR LQYTFGKEKH SQTVPCDAWR MDRGGFAWRL DVKAALSLGR

Best Arabidopsis Sequence Match ( AT3G27250.1 )
(BLAST)

001: MDQDDWLGTL RYAGKAQDKV SVDALMLRYR PIAPKPTTGQ PCGVADNNNN SSYGMSKRTK RKYVRVSKNN KGTCRGKSRS DLSDDREQTD VVTLQLLPEK
101: SDISGEYSPL DQDSLDPSVK SIIGEETQET NTWGMFNGSV TAEMETWVTV ESVTSVCEGS LSSHAVGITD VEIVDNLGKD TCPAFVSDGS NRVVWVNEAY
201: RRNVSGDDST ASVSPEVVVW LVAEEATAAM HCNYQAFTCR VRMQYTWKET KYTKTVPCDV WKMEFGGFAW RLDTTAALTL WL

Arabidopsis Description

At3g27250 [Source:UniProtKB/TrEMBL;Acc:Q9LK28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.