Factsheet for Os12t0242500-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1
plastid 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

extracellular: 25047395

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os09t0416500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63350.1	Os09t0416500-01	AT1G80650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G247700.1	Wheat	mitochondrion	53.5	59.66
TraesCS3D01G219400.1	Wheat	mitochondrion	53.19	58.33
TraesCS3A01G217400.1	Wheat	mitochondrion	52.28	57.91
EES15909	Sorghum	peroxisome	56.84	55.99
Zm00001d023800_P001	Maize	mitochondrion	49.85	51.57
Zm00001d023799_P001	Maize	mitochondrion	49.85	51.57
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	34.65	38.0
PGSC0003DMT400003036	Potato	cytosol	7.6	34.25
GSMUA_Achr8P28790_001	Banana	cytosol	29.18	33.1
GSMUA_Achr3P17030_001	Banana	cytosol	28.57	31.76
KRH63730	Soybean	plastid	23.71	31.45
KRH54218	Soybean	plastid	22.8	30.49
KRH57200	Soybean	plastid	26.14	29.76
CDX68466	Canola	cytosol	26.44	29.0
KRH03914	Soybean	plastid	25.53	28.97
AT5G63350.1	Thale cress	nucleus	26.14	28.48
Bra029900.1-P	Field mustard	cytosol	25.84	28.43
CDY53329	Canola	cytosol	25.84	28.43
PGSC0003DMT400039289	Potato	nucleus	26.14	27.83
Solyc03g111100.1.1	Tomato	nucleus	26.14	27.74
AT3G48510.1	Thale cress	cytosol	24.32	27.21
VIT_14s0171g00360.t01	Wine grape	nucleus	22.8	26.79
Bra038625.1-P	Field mustard	cytosol	24.01	26.78
AT3G27250.1	Thale cress	cytosol	22.49	26.24
CDY45734	Canola	nucleus	23.4	26.19
AT5G50360.1	Thale cress	nucleus	22.8	25.77
Bra022512.1-P	Field mustard	nucleus	21.58	25.36
Bra038626.1-P	Field mustard	plastid	20.36	25.0
Bra025261.1-P	Field mustard	cytosol	20.97	24.56
KRH57635	Soybean	plastid	22.49	24.1
Bra032992.1-P	Field mustard	cytosol	20.06	23.83
CDY34167	Canola	cytosol	20.06	23.83
PGSC0003DMT400062383	Potato	cytosol	10.33	23.78
CDY13694	Canola	cytosol	20.36	23.76
CDX83671	Canola	cytosol	20.36	23.76
PGSC0003DMT400052105	Potato	cytosol	20.06	23.4
KRG94328	Soybean	cytosol	21.88	23.3
CDY58582	Canola	cytosol	19.76	23.13
CDY37923	Canola	nucleus	17.93	22.87
Bra019549.1-P	Field mustard	nucleus	17.93	22.87
Solyc02g068030.1.1	Tomato	cytosol	19.45	22.86
AT5G40800.1	Thale cress	cytosol	18.54	22.43
Bra025545.1-P	Field mustard	cytosol, plastid	18.54	22.02
CDY52703	Canola	cytosol, plastid	18.54	22.02
CDY36383	Canola	cytosol, plastid	18.54	22.02
AT5G40790.1	Thale cress	cytosol	19.76	21.45
Solyc02g093890.1.1	Tomato	cytosol	17.63	21.09
CDY52704	Canola	cytosol, nucleus, plastid	19.15	20.32
CDY36382	Canola	cytosol, nucleus, plastid	18.84	20.13
Bra025546.1-P	Field mustard	cytosol, nucleus, plastid	18.84	20.0
CDY30747	Canola	cytosol, mitochondrion, nucleus, plastid	23.1	16.96
CDY16370	Canola	plastid	21.88	14.85
CDY56888	Canola	cytosol	11.55	14.79
CDX91547	Canola	nucleus	20.97	14.47
Bra029231.1-P	Field mustard	nucleus	22.49	10.35

Protein Annotations

EnsemblPlants:Os12t0242500-01	EnsemblPlantsGene:Os12g0242500	EntrezGene:9268826	PANTHER:PTHR33595	PANTHER:PTHR33595:SF3	ProteinID:BAH95596.1
ProteinID:BAT16505.1	RefSeq:XP_015618772.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0001B65F11	UniProt:C7J9S7
MapMan:35.2	:	:	:	:	:

Description

Conserved hypothetical protein. (Os12t0242500-01)

Coordinates

chr12:+:7892375..7893898

Molecular Weight (calculated)

33187.8 Da

IEP (calculated)

10.535

GRAVY (calculated)

-0.100

Length

329 amino acids

Sequence
(BLAST)

001: MERKGGCCLA PRYGAASAAA AAGAGGQAAM AWQMGRIMLK FRPIAPKPAA MAPAPVAGVG AGKGKRKAVS GSGGGRRGRK PKKAATAATL APAHAPAPAP
101: SVAGKTVPKV VGDCKEMERE KEKEKSLSSP SSSSSGMTSV ESSPPPPPSA MLPLLPVRPL DTTTTTPPPV APAHAAAQSV VVAPPPRALL PAAAVVTVED
201: VTSVWRDGGS GAARAGDDGD GAPAFVSDQW GRVTWKNAAF HRAVAPDAAA PDQARVALAA RDGDAAAAVP AWGTCAGFTC RVRVHPSPYS PRRSSVVAPC
301: DVWRLDAGGC YLWRLDLQAA LSLSLGALP

Best Arabidopsis Sequence Match ( AT3G48510.1 )
(BLAST)

001: MDGRGGCCIA RYAIGSGPYD LSKADRIMLR FRPIAPKPAS PGGVNPVSSG DSGGGSSDVS FRSASRRKRK CHQLKENGGN AKRCTRRKTS DKPVVHGSAN
101: AVTLSLLPEK PIDLKAAVEK QKRQGPLWLS FKDGGGMLTP AYQTPEIVQR TVVISSCMTV ERVTDAWIDG YGLGRSDEER KMNLVRDTCP GFISDGSGRV
201: TWTNDAYRKM ARDIIPVEEG APEITSGDSF HVIVRLVMRE RPMLTSPGFT CRMKLQYTCQ NRERGSVTVP CDVWRMDVGG GFAWRLDVKA ALCL

Arabidopsis Description

At3g48510 [Source:UniProtKB/TrEMBL;Acc:Q9SMP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.