Factsheet for Os09t0416500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0303000-02
Os02t0445100-01
Os02t0445600-01
Os03t0306800-01
Os06t0137400-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80650.1	Os02t0445100-01	AT1G19830.1	21798944
AT1G80650.1	Os02t0445600-01	AT1G19830.1	21798944
AT1G80650.1	Os06t0137400-00	AT1G19830.1	21798944
AT1G80650.1	Os01t0303000-02	AT2G47400.1	21798944
AT1G80650.1	Os03t0306800-01	AT2G47400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96734	Sorghum	nucleus	43.33	45.35
Zm00001d020472_P001	Maize	nucleus	28.89	42.62
TraesCS5D01G233400.1	Wheat	cytosol	39.44	41.04
Zm00001d020476_P001	Maize	nucleus	41.67	40.76
TraesCS5A01G226200.1	Wheat	cytosol	41.67	39.68
TraesCS5B01G224700.3	Wheat	cytosol	41.11	38.95
CDY39957	Canola	cytosol	16.67	38.46
Zm00001d005754_P001	Maize	cytosol, peroxisome, plastid	28.89	36.62
KRH09670	Soybean	plastid	23.89	22.16
AT4G00420.4	Thale cress	nucleus	22.78	21.58
CDY53218	Canola	nucleus	23.33	20.9
AT1G80650.1	Thale cress	nucleus	22.22	20.2
Bra008448.1-P	Field mustard	nucleus	22.22	19.8

Protein Annotations

EMBL:AK242007	EnsemblPlants:Os09t0416500-01	EnsemblPlantsGene:Os09g0416500	EntrezGene:4347062	Gene3D:3.30.160.20	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PFAM:PF14709
PFscan:PS50137	ProteinID:BAT08088.1	RefSeq:XP_015610629.1	SEG:seg	SMART:SM00358	SUPFAM:SSF54768
UniParc:UPI000188B026	UniProt:B7F972	MapMan:16.10.1.4.2	:	:	:

Description

Hypothetical conserved gene. (Os09t0416500-01)

Coordinates

chr9:+:14896175..14901389

Molecular Weight (calculated)

19936.4 Da

IEP (calculated)

5.560

GRAVY (calculated)

-0.539

Length

180 amino acids

Sequence
(BLAST)

001: MATPVNQDSI TPVNTWEEDE LELEEEEGLL CKRKRAKFSD STVRQQQGIE AAAMDMVMEE AAALSLGVSA SKEPVHVATG RVEQSNCGAK HANGTTDNEP
101: ARLRLHKICS ATHWKEPSYD FEEQGPSHLK LFTCKVTIHV DTFTTTIVEC ISEPNRSKKA AQEHAAQGAL WYLKIFGHAN

Best Arabidopsis Sequence Match ( AT4G00420.3 )
(BLAST)

001: MLLQRCESKF KIRKLNDTVE EDNVTQMEPN FTLENTLVSE PEADLRPHTT EPTTEEETQR SSAKSQLYNL CSVRHWKAPL YEYIAEGPCH MKIFTGKVTV
101: EMKEDSRITV LECFGNPQYK KKIAAEQAAE AALWYLKNVG YTLQTEKASG RKGRSKPISK MMVTGEPV

Arabidopsis Description

Double-stranded RNA-binding domain (DsRBD)-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JHB3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.