Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000451.1-P | |
| Bra004459.1-P | |
| Bra021396.1-P | |
| Bra025770.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G80650.1 | Bra025770.1-P | AT1G19830.1 | 21798944 |
| AT1G80650.1 | Bra000451.1-P | AT2G47400.1 | 21798944 |
| AT1G80650.1 | Bra004459.1-P | AT2G47400.1 | 21798944 |
| AT1G80650.1 | Bra021396.1-P | AT2G47400.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53218 | Canola | nucleus | 93.07 | 93.53 |
| CDY39957 | Canola | cytosol | 23.76 | 61.54 |
| AT1G80650.1 | Thale cress | nucleus | 47.52 | 48.48 |
| Zm00001d020472_P001 | Maize | nucleus | 19.8 | 32.79 |
| KRH09670 | Soybean | plastid | 25.25 | 26.29 |
| Zm00001d020476_P001 | Maize | nucleus | 21.29 | 23.37 |
| Os09t0416500-01 | Rice | nucleus | 19.8 | 22.22 |
| EER96734 | Sorghum | nucleus | 18.32 | 21.51 |
| TraesCS5A01G226200.1 | Wheat | cytosol | 18.81 | 20.11 |
| TraesCS5B01G224700.3 | Wheat | cytosol | 18.81 | 20.0 |
| TraesCS5D01G233400.1 | Wheat | cytosol | 16.83 | 19.65 |
| Zm00001d005754_P001 | Maize | cytosol, peroxisome, plastid | 9.9 | 14.08 |
Protein Annotations
| EnsemblPlants:Bra008448.1 | EnsemblPlants:Bra008448.1-P | EnsemblPlantsGene:Bra008448 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR014720 | InterPro:dsRBD_dom | PFAM:PF14709 | PFscan:PS50137 |
| SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 | UniParc:UPI0002546A71 | UniProt:M4CW51 | MapMan:16.10.1.4.2 |
Description
AT1G80650 (E=3e-046) RTL1 | RTL1 (RNase three-like protein 1); RNA binding / double-stranded RNA binding
Coordinates
chrA02:-:15696363..15697389
Molecular Weight (calculated)
22754.2 Da
IEP (calculated)
9.227
GRAVY (calculated)
-0.741
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDQKTTSR RRSIIISLKD IPPLDPSSIP PTHSSLKPRT MMVPGTVPKQ RYQEMRLEED NVKSSFSNIQ IDPNSTRSVS TTQENHPVLK PVEDAKSISK
101: DESKKGSAKS LLHEMCISKR WKPPVYDCCN VDGPCHMRLF TYKVVVEIRD SSGTTVLECF GDPKHKKKAA AEHAAEGALW YLDHAKPNQT KAASVTHHHL
201: LR
101: DESKKGSAKS LLHEMCISKR WKPPVYDCCN VDGPCHMRLF TYKVVVEIRD SSGTTVLECF GDPKHKKKAA AEHAAEGALW YLDHAKPNQT KAASVTHHHL
201: LR
001: MEDQETKRIT KKPSRSIIIS LKDIPPLDPS SIPSMKPMAQ DHHNVGMQRF QEKTDFKFEE EDNAISSFSN IQIDPNSTRS ISLEKKLAPK PDEEHTTTTK
101: PISKDDESKT RRGSAKSVLH EMCASKRWRP PVYECCNVDG PCHLRLFTYK VMVEIRDSSG KTVLECFGDP RRKKKAAAEH AAEGALWYLE HVKTKPHQ
101: PISKDDESKT RRGSAKSVLH EMCASKRWRP PVYECCNVDG PCHLRLFTYK VMVEIRDSSG KTVLECFGDP RRKKKAAAEH AAEGALWYLE HVKTKPHQ
Arabidopsis Description
RTL1Ribonuclease 3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8N2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.