Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008448.1-P | Field mustard | nucleus | 93.53 | 93.07 |
| CDY39957 | Canola | cytosol | 23.88 | 61.54 |
| AT1G80650.1 | Thale cress | nucleus | 47.76 | 48.48 |
| Zm00001d020472_P001 | Maize | nucleus | 19.9 | 32.79 |
| KRH09670 | Soybean | plastid | 24.38 | 25.26 |
| Zm00001d020476_P001 | Maize | nucleus | 21.39 | 23.37 |
| Os09t0416500-01 | Rice | nucleus | 20.9 | 23.33 |
| EER96734 | Sorghum | nucleus | 18.41 | 21.51 |
| TraesCS5A01G226200.1 | Wheat | cytosol | 18.91 | 20.11 |
| TraesCS5B01G224700.3 | Wheat | cytosol | 18.91 | 20.0 |
| TraesCS5D01G233400.1 | Wheat | cytosol | 16.92 | 19.65 |
| Zm00001d005754_P001 | Maize | cytosol, peroxisome, plastid | 9.95 | 14.08 |
Protein Annotations
| EnsemblPlants:CDY53218 | EnsemblPlantsGene:GSBRNA2T00010229001 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR014720 | InterPro:dsRBD_dom | PFAM:PF14709 | PFscan:PS50137 | ProteinID:CDY53218 |
| ProteinID:CDY53218.1 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 | UniParc:UPI0004EEA25F | UniProt:A0A078IW91 |
| MapMan:16.10.1.4.2 | : | : | : | : | : |
Description
BnaA02g19500DBnaA02g19500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IW91]
Coordinates
chrLK033177:+:10080..11330
Molecular Weight (calculated)
22657.1 Da
IEP (calculated)
9.227
GRAVY (calculated)
-0.745
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDQKTTSR RRSIIISLKD IPPLDPSSIP PTHSSLKPRT MMVPGTVPKQ RYQEMRLEED NVKSSFSNIQ IDPNSTRSVS TTQENHPVLK PVEDPKSISK
101: DETKKGSAKS LLHEMCISKR WKPPVYDCCN VDGPCHMRLF TYKVVVEIRD SSGTTVLECF GDPKHKKKAA AEHAAEGALW YLDHAKPNQT KAASVTHHLL
201: R
101: DETKKGSAKS LLHEMCISKR WKPPVYDCCN VDGPCHMRLF TYKVVVEIRD SSGTTVLECF GDPKHKKKAA AEHAAEGALW YLDHAKPNQT KAASVTHHLL
201: R
001: MEDQETKRIT KKPSRSIIIS LKDIPPLDPS SIPSMKPMAQ DHHNVGMQRF QEKTDFKFEE EDNAISSFSN IQIDPNSTRS ISLEKKLAPK PDEEHTTTTK
101: PISKDDESKT RRGSAKSVLH EMCASKRWRP PVYECCNVDG PCHLRLFTYK VMVEIRDSSG KTVLECFGDP RRKKKAAAEH AAEGALWYLE HVKTKPHQ
101: PISKDDESKT RRGSAKSVLH EMCASKRWRP PVYECCNVDG PCHLRLFTYK VMVEIRDSSG KTVLECFGDP RRKKKAAAEH AAEGALWYLE HVKTKPHQ
Arabidopsis Description
RTL1Ribonuclease 3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8N2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.