CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03145
CDY12039
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47400.1	CDY03145	AT1G34430.1	21798944
AT2G47400.1	CDY12039	AT1G34430.1	21798944
AT2G47400.1	CDY32970	AT5G42980.1	15352244
AT2G47400.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83329	Canola	plastid	91.2	90.48
CDY51422	Canola	plastid	83.2	83.87
CDX80101	Canola	plastid	81.6	80.95
CDX95723	Canola	plastid	81.6	80.95
CDY55379	Canola	plastid	80.0	79.37
AT2G47400.1	Thale cress	plastid	76.0	76.61
CDY11420	Canola	plastid	71.2	68.46
CDX67892	Canola	plastid	68.0	65.89
CDY25110	Canola	plastid	68.0	65.89
CDX76635	Canola	plastid	58.4	56.59
Solyc06g009630.1.1	Tomato	plastid	54.4	53.54
Os01t0303000-02	Rice	extracellular, plasma membrane, plastid	52.8	53.23
GSMUA_Achr1P13010_001	Banana	plastid	52.8	51.16
Solyc01g079470.2.1	Tomato	plastid	50.4	50.81
PGSC0003DMT400018798	Potato	cytosol	51.2	50.79
KRH69219	Soybean	plastid	51.2	50.0
PGSC0003DMT400023336	Potato	plastid	49.6	50.0
TraesCS4B01G184400.1	Wheat	plastid	51.2	49.23
TraesCS2D01G034400.1	Wheat	plastid	49.6	49.21
TraesCS2B01G048200.1	Wheat	plastid	49.6	49.21
TraesCS2A01G035100.1	Wheat	plastid	49.6	49.21
Zm00001d028880_P001	Maize	plastid	48.8	48.41
GSMUA_Achr11P...	Banana	plastid	49.6	48.06
EER94980	Sorghum	plastid	49.6	47.69
TraesCS4A01G120600.1	Wheat	plastid	48.8	46.92
GSMUA_Achr8P10530_001	Banana	plastid	48.0	46.88
Os03t0306800-01	Rice	extracellular	48.0	45.8
KRH68260	Soybean	plastid	48.0	45.45
TraesCS4D01G185400.1	Wheat	plastid	47.2	45.38
KRH31794	Soybean	plastid	46.4	44.96
GSMUA_Achr11P...	Banana	plastid	45.6	44.19
EER88061	Sorghum	plastid	44.8	43.41
Zm00001d044925_P001	Maize	plastid	47.2	42.14
HORVU4Hr1G053940.2	Barley	plastid	48.0	37.74
KRG96526	Soybean	nucleus	48.8	36.97
CDX88298	Canola	plastid	34.4	32.09
CDX87586	Canola	plastid	34.4	31.85
VIT_01s0026g02480.t01	Wine grape	extracellular	49.6	31.47

Protein Annotations

EnsemblPlants:CDY27491	EnsemblPlantsGene:GSBRNA2T00038154001	InterPro:DUF_CP12	PANTHER:PTHR33921	PANTHER:PTHR33921:SF9	PFAM:PF02672
ProteinID:CDY27491	ProteinID:CDY27491.1	SMART:SM01093	UniParc:UPI0004EE470D	UniProt:A0A078GQA6	MapMan:35.1

Description

BnaC04g51320DBnaC04g51320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQA6]

Coordinates

chrLK032205:-:265452..265829

Molecular Weight (calculated)

13547.8 Da

IEP (calculated)

4.536

GRAVY (calculated)

-0.478

Length

125 amino acids

Sequence
(BLAST)

001: MATIAATGLN VAIPRAFVRP VARLSAPVRL NYPWKFSSMN RMVMSVKATS EGGISDKVEK SIQEAKETCA DDTVSGECVA AWDEVEELSA AASHARDKKK
101: AGGSDPLEEY CSDNPETDEC RTYDN

Best Arabidopsis Sequence Match ( AT2G47400.1 )
(BLAST)

001: MTTIAAAGLN VATPRVVVRP VARVLGPVRL NYPWKFGSMK RMVVVKATSE GEISEKVEKS IQEAKETCAD DPVSGECVAA WDEVEELSAA ASHARDKKKA
101: GGSDPLEEYC NDNPETDECR TYDN

Arabidopsis Description

CP12-1Calvin cycle protein CP12-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22914]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.