Factsheet for Solyc06g009630.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g020940.2.1
Solyc04g009030.2.1
Solyc06g073150.2.1
Solyc06g075780.1.1
Solyc08g076220.2.1
Solyc11g017250.1.1
Solyc11g017300.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47400.1	Solyc11g017250.1.1	AT1G34430.1	21798944
AT2G47400.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT2G47400.1	Solyc11g073060.1.1	AT3G46090.1	17259181
AT3G62410.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT3G62410.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT3G62410.1	Solyc08g076220.2.1	AT1G32060.1	17947231
AT3G62410.1	Solyc02g020940.2.1	AT3G26650.1	17947231
AT3G62410.1	Solyc04g009030.2.1	AT3G26650.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018798	Potato	cytosol	70.87	71.43
Solyc01g079470.2.1	Tomato	plastid	64.57	66.13
Bra007678.1-P	Field mustard	plastid	58.27	56.92
CDY11420	Canola	plastid	58.27	56.92
CDX80101	Canola	plastid	55.12	55.56
Bra004459.1-P	Field mustard	plastid	55.12	55.12
CDY51422	Canola	plastid	53.54	54.84
CDY27491	Canola	plastid	53.54	54.4
Bra003499.1-P	Field mustard	plastid	55.12	54.26
CDX67892	Canola	plastid	55.12	54.26
CDY25110	Canola	plastid	55.12	54.26
AT2G47400.1	Thale cress	plastid	52.76	54.03
Bra021396.1-P	Field mustard	plastid	52.76	54.03
CDX83329	Canola	plastid	53.54	53.97
CDY55379	Canola	plastid	53.54	53.97
CDX95723	Canola	plastid	53.54	53.97
Bra000451.1-P	Field mustard	plastid	53.54	53.97
AT3G62410.1	Thale cress	plastid	54.33	52.67
CDX76635	Canola	plastid	51.18	50.39
GSMUA_Achr1P13010_001	Banana	plastid	50.39	49.61
GSMUA_Achr11P...	Banana	plastid	48.82	48.06
GSMUA_Achr8P10530_001	Banana	plastid	48.03	47.66
Os01t0303000-02	Rice	extracellular, plasma membrane, plastid	46.46	47.58
TraesCS4B01G184400.1	Wheat	plastid	47.24	46.15
KRH31794	Soybean	plastid	46.46	45.74
KRH68260	Soybean	plastid	47.24	45.45
TraesCS2D01G034400.1	Wheat	plastid	44.88	45.24
TraesCS2B01G048200.1	Wheat	plastid	44.88	45.24
TraesCS2A01G035100.1	Wheat	plastid	44.88	45.24
Os03t0306800-01	Rice	extracellular	46.46	45.04
TraesCS4D01G185400.1	Wheat	plastid	45.67	44.62
KRH69219	Soybean	plastid	44.88	44.53
Zm00001d028880_P001	Maize	plastid	44.09	44.44
EER88061	Sorghum	plastid	44.88	44.19
GSMUA_Achr11P...	Banana	plastid	44.88	44.19
TraesCS4A01G120600.1	Wheat	plastid	44.88	43.85
EER94980	Sorghum	plastid	44.09	43.08
Zm00001d044925_P001	Maize	plastid	42.52	38.57
HORVU4Hr1G053940.2	Barley	plastid	46.46	37.11
KRG96526	Soybean	nucleus	44.88	34.55
VIT_01s0026g02480.t01	Wine grape	extracellular	46.46	29.95
Solyc04g082910.1.1	Tomato	plastid	18.9	27.59

Protein Annotations

EnsemblPlants:Solyc06g009630.1.1	EnsemblPlantsGene:Solyc06g009630.1	InterPro:DUF_CP12	PANTHER:PTHR33921	PANTHER:PTHR33921:SF9	PFAM:PF02672
SEG:seg	SMART:SM01093	UniParc:UPI0002766EC1	UniProt:K4C3Z3	MapMan:35.1	:

Description

No Description!

Coordinates

chr6:+:3584164..3584547

Molecular Weight (calculated)

14051.5 Da

IEP (calculated)

4.678

GRAVY (calculated)

-0.599

Length

127 amino acids

Sequence
(BLAST)

001: MASIAGVSIT IPTISSDSPK IQPLKLQTLN SPWKKSSQLG YRRMMYVVVP RVVPDKKLSD LVAESVKEAE ETCAEDPVSG ECKAAWDVVE ETSAAASHAR
101: DKKKESDVLE NYCKDNPETD ECRTYDN

Best Arabidopsis Sequence Match ( AT3G62410.1 )
(BLAST)

001: MATIATGLNI ATQRVFVTSE NRPVCLAGPV HLNNSWNLGS RTTNRMMKLQ PIKAAPEGGI SDVVEKSIKE AQETCAGDPV SGECVAAWDE VEELSAAASH
101: ARDKKKADGS DPLEEYCKDN PETNECRTYD N

Arabidopsis Description

CP12-2Calvin cycle protein CP12-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.