CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03145
CDY12039
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47400.1	CDY03145	AT1G34430.1	21798944
AT2G47400.1	CDY12039	AT1G34430.1	21798944
AT2G47400.1	CDY32970	AT5G42980.1	15352244
AT2G47400.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021396.1-P	Field mustard	plastid	98.39	98.39
CDX80101	Canola	plastid	94.35	92.86
CDX95723	Canola	plastid	91.94	90.48
CDY55379	Canola	plastid	91.94	90.48
AT2G47400.1	Thale cress	plastid	87.1	87.1
CDY27491	Canola	plastid	83.87	83.2
CDX83329	Canola	plastid	83.87	82.54
CDY11420	Canola	plastid	73.39	70.0
CDY25110	Canola	plastid	70.97	68.22
CDX67892	Canola	plastid	70.16	67.44
CDX76635	Canola	plastid	63.71	61.24
Solyc06g009630.1.1	Tomato	plastid	54.84	53.54
GSMUA_Achr1P13010_001	Banana	plastid	55.65	53.49
PGSC0003DMT400018798	Potato	cytosol	52.42	51.59
Zm00001d028880_P001	Maize	plastid	50.81	50.0
Solyc01g079470.2.1	Tomato	plastid	50.0	50.0
EER94980	Sorghum	plastid	50.81	48.46
TraesCS4A01G120600.1	Wheat	plastid	50.81	48.46
KRH69219	Soybean	plastid	50.0	48.44
Os01t0303000-02	Rice	extracellular, plasma membrane, plastid	48.39	48.39
PGSC0003DMT400023336	Potato	plastid	48.39	48.39
Os03t0306800-01	Rice	extracellular	50.81	48.09
GSMUA_Achr11P...	Banana	plastid	50.0	48.06
TraesCS4D01G185400.1	Wheat	plastid	50.0	47.69
TraesCS4B01G184400.1	Wheat	plastid	50.0	47.69
TraesCS2A01G035100.1	Wheat	plastid	48.39	47.62
TraesCS2B01G048200.1	Wheat	plastid	48.39	47.62
TraesCS2D01G034400.1	Wheat	plastid	48.39	47.62
GSMUA_Achr8P10530_001	Banana	plastid	48.39	46.88
KRH31794	Soybean	plastid	48.39	46.51
GSMUA_Achr11P...	Banana	plastid	48.39	46.51
KRH68260	Soybean	plastid	48.39	45.45
EER88061	Sorghum	plastid	45.97	44.19
Zm00001d044925_P001	Maize	plastid	46.77	41.43
KRG96526	Soybean	nucleus	54.03	40.61
HORVU4Hr1G053940.2	Barley	plastid	50.0	38.99
VIT_01s0026g02480.t01	Wine grape	extracellular	55.65	35.03
CDX88298	Canola	plastid	35.48	32.84
CDX87586	Canola	plastid	35.48	32.59

Protein Annotations

EnsemblPlants:CDY51422	EnsemblPlantsGene:GSBRNA2T00003358001	InterPro:DUF_CP12	PANTHER:PTHR33921	PANTHER:PTHR33921:SF9	PFAM:PF02672
ProteinID:CDY51422	ProteinID:CDY51422.1	SMART:SM01093	UniParc:UPI00018C70EF	UniProt:A0A078INA3	MapMan:35.1

Description

BnaA04g26990DBnaA04g26990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INA3]

Coordinates

chrLK032993:+:41725..42497

Molecular Weight (calculated)

13448.6 Da

IEP (calculated)

4.429

GRAVY (calculated)

-0.478

Length

124 amino acids

Sequence
(BLAST)

001: MTTIAATGLN VATPRVFVRP VARLSAPVRL NYPWKFSSMN RMVMSVKATS EGGISDKVEK SIQEATETCA DDPVSGECVA AWDEVEELSA AASHARDKKK
101: AGGSDPLEEY CSDNPETDEC RTYD

Best Arabidopsis Sequence Match ( AT2G47400.1 )
(BLAST)

001: MTTIAAAGLN VATPRVVVRP VARVLGPVRL NYPWKFGSMK RMVVVKATSE GEISEKVEKS IQEAKETCAD DPVSGECVAA WDEVEELSAA ASHARDKKKA
101: GGSDPLEEYC NDNPETDECR TYDN

Arabidopsis Description

CP12-1Calvin cycle protein CP12-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22914]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.