CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69543
CDX78617
CDX80101
CDX83329
CDX85057
CDX85560
CDX91004
CDX92201
CDX95723
CDX95783
CDY27491
CDY46888
CDY51422
CDY55379

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34430.1	CDX80101	AT2G47400.1	21798944
AT1G34430.1	CDX83329	AT2G47400.1	21798944
AT1G34430.1	CDX95723	AT2G47400.1	21798944
AT1G34430.1	CDY27491	AT2G47400.1	21798944
AT1G34430.1	CDY51422	AT2G47400.1	21798944
AT1G34430.1	CDY55379	AT2G47400.1	21798944
AT1G34430.1	CDY46888	AT3G17668.1	21798944
AT1G34430.1	CDX92201	AT3G18140.1	21798944
AT1G34430.1	CDX95783	AT3G18140.1	21798944
AT1G34430.1	CDX69543	AT5G15190.1	21798944
AT1G34430.1	CDX78617	AT5G15190.1	21798944
AT1G34430.1	CDX85057	AT5G15190.1	21798944
AT1G34430.1	CDX85560	AT5G15190.1	21798944
AT1G34430.1	CDX91004	AT5G15190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12039	Canola	plastid	94.74	96.0
AT1G34430.1	Thale cress	plastid	86.18	84.52
KRG91819	Soybean	endoplasmic reticulum, nucleus	78.95	77.42
VIT_18s0072g01000.t01	Wine grape	plastid	80.7	77.15
KRH34962	Soybean	plastid	78.95	76.76
PGSC0003DMT400023831	Potato	plastid	73.68	72.41
Solyc11g017250.1.1	Tomato	plastid	73.9	72.01
GSMUA_Achr3P17420_001	Banana	cytosol	35.31	64.66
CDX83563	Canola	plastid	63.38	60.71
CDY13593	Canola	plastid	63.38	60.59
CDY39183	Canola	plastid	62.28	60.17
CDY04184	Canola	plastid	62.94	59.92
CDX73652	Canola	mitochondrion	13.38	32.62
CDX82504	Canola	plastid	33.33	28.25
CDY55206	Canola	mitochondrion	31.14	27.73
CDX97529	Canola	mitochondrion	33.77	27.4
CDX75740	Canola	mitochondrion, plastid	33.33	27.09
CDY33075	Canola	mitochondrion, plastid	32.68	26.85
CDY24058	Canola	mitochondrion	32.24	26.49
CDX74077	Canola	mitochondrion, plastid	24.12	23.01
CDY08029	Canola	mitochondrion	24.12	22.68
CDX95323	Canola	mitochondrion	28.73	20.44
CDY23198	Canola	mitochondrion	7.89	19.89
CDY20790	Canola	mitochondrion	20.18	19.78
CDY06613	Canola	mitochondrion	20.18	19.74
CDY19918	Canola	mitochondrion	19.96	19.61
CDY17300	Canola	mitochondrion	19.96	19.53
CDY23199	Canola	mitochondrion, plastid	28.95	19.16
CDY21016	Canola	mitochondrion, plastid	19.52	18.7
CDY31217	Canola	mitochondrion, plastid	19.52	18.5
CDY36727	Canola	plastid	20.61	17.57
CDY12012	Canola	plastid	19.96	17.43
CDY34925	Canola	mitochondrion	8.55	15.18
CDY69187	Canola	cytosol, nucleus	0.22	0.16
CDY17299	Canola	cytosol, plastid	0.22	0.15

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
GO:A0A078EMC8	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	EnsemblPlants:CDY03145	ProteinID:CDY03145	ProteinID:CDY03145.1
ncoils:Coil	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016740	GO:GO:0016746	EnsemblPlantsGene:GSBRNA2T00115573001	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213
InterPro:IPR036625	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968
PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF61	SUPFAM:SSF47005	SUPFAM:SSF51230
SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI0004EE674B	SEG:seg	:	:

Description

BnaC06g08280D

Coordinates

chrLK031940:+:995874..998026

Molecular Weight (calculated)

47817.7 Da

IEP (calculated)

8.969

GRAVY (calculated)

0.048

Length

456 amino acids

Sequence
(BLAST)

001: MSRLLNTSFL PCSTCRTRSS SAPHSRVNKP RIVSVRAKIR EIFMPALSST MTEGKIVSWV KSEGDKLSKG ESVVVVESDK ADMDVETFYD GYLAAIMVEE
101: GGVAPVGSAI ALLAETEEEI ADARAKASGG GGGTSPSPPV SQAPPVVEEK VSASVPPPKV VSSASAVHPA SEGGKRVVAS PYAKKLAKEL KVELAALVGS
201: GPMGRIVAKD VEAAVAAAPP VQKEAMAPAV AAELGSVVPF TTMQGAVSRN MVESLSVPTF RVGYTINTDA LDALYKKIKS KGVTMTALLA KATALALAKH
301: PVVNSSCRDG NSFVYNSSIN IAVAVAIDGG LITPVLQNAD KVDIYSLSRK WKELVDKARA KQLQPQEYNT GTFTLSNLGM FGVDRFDAIL PPGTGAIMAV
401: GASQPTVVAT KDGRIGMKNQ MQVNVTADHR VIYGADLAQF LQTLASIIED PKDLTF

Best Arabidopsis Sequence Match ( AT1G34430.1 )
(BLAST)

001: MSRLLQTPFL PSVSLPTKTR SSVTGFRVKP RIIPIQAKIR EIFMPALSST MTEGKIVSWV KSEGDKLNKG ESVVVVESDK ADMDVETFYD GYLAAIMVEE
101: GGVAPVGSAI ALLAETEDEI ADAKAKASGG GGGGDSKAPP ASPPTAAVEA PVSVEKKVAA APVSIKAVAA SAVHPASEGG KRIVASPYAK KLAKELKVEL
201: AGLVGSGPMG RIVAKDVEAV AAGGGVQAAV AVKEVVAAPG VELGSVVPFT TMQGAVSRNM VESLGVPTFR VGYTISTDAL DALYKKIKSK GVTMTALLAK
301: ATALALAKHP VVNSSCRDGN SFVYNSSINV AVAVAIDGGL ITPVLQNADK VDIYSLSRKW KELVDKARAK QLQPQEYNTG TFTLSNLGMF GVDRFDAILP
401: PGTGAIMAVG ASQPSVVATK DGRIGMKNQM QVNVTADHRV IYGADLAQFL QTLASIIEDP KDLTF

Arabidopsis Description

EMB3003Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.