CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20790	Canola	mitochondrion	98.5	98.71
Bra035551.1-P	Field mustard	mitochondrion	92.06	98.62
CDY17300	Canola	mitochondrion	94.85	94.85
CDY19918	Canola	mitochondrion	93.35	93.75
AT5G55070.1	Thale cress	mitochondrion	90.56	90.95
CDY12012	Canola	plastid	92.92	82.95
CDY36727	Canola	plastid	93.35	81.31
Solyc12g005080.1.1	Tomato	nucleus	63.3	79.73
Solyc07g064800.2.1	Tomato	extracellular, nucleus	72.1	71.79
VIT_19s0090g00750.t01	Wine grape	cytosol	60.09	71.43
PGSC0003DMT400071652	Potato	mitochondrion	72.1	71.34
PGSC0003DMT400057449	Potato	mitochondrion	71.46	71.15
VIT_10s0116g01480.t01	Wine grape	mitochondrion	71.03	69.98
Os04t0394200-01	Rice	mitochondrion	65.67	69.55
GSMUA_Achr3P18670_001	Banana	mitochondrion	67.17	69.25
Os02t0514700-00	Rice	mitochondrion	59.01	69.1
TraesCS4D01G070200.1	Wheat	mitochondrion	64.81	68.95
GSMUA_AchrUn_...	Banana	mitochondrion	66.74	68.81
KRH14369	Soybean	nucleus	68.45	68.75
TraesCS4B01G071300.1	Wheat	mitochondrion	64.59	68.72
TraesCS4A01G243500.1	Wheat	golgi, mitochondrion, unclear	64.38	68.49
KRH73773	Soybean	mitochondrion	67.81	68.1
TraesCS2D01G039500.2	Wheat	mitochondrion	65.02	68.09
TraesCS2A01G041100.1	Wheat	golgi, nucleus, unclear	64.81	67.87
Zm00001d025258_P009	Maize	mitochondrion	64.81	67.71
TraesCS2B01G053600.1	Wheat	mitochondrion	62.02	67.68
CDY21016	Canola	mitochondrion, plastid	67.81	66.39
CDY31217	Canola	mitochondrion, plastid	68.24	66.11
OQU93042	Sorghum	mitochondrion	65.67	65.52
Zm00001d003923_P002	Maize	mitochondrion	64.81	63.85
GSMUA_Achr9P01190_001	Banana	cytosol	67.6	63.38
HORVU4Hr1G011850.1	Barley	mitochondrion, plastid	64.16	62.82
CDX73652	Canola	mitochondrion	12.45	31.02
CDY55206	Canola	mitochondrion	25.97	23.63
CDX82504	Canola	plastid	26.82	23.23
CDX97529	Canola	mitochondrion	27.9	23.13
CDX75740	Canola	mitochondrion, plastid	27.68	22.99
CDY33075	Canola	mitochondrion, plastid	26.82	22.52
CDY24058	Canola	mitochondrion	26.61	22.34
CDY23198	Canola	mitochondrion	7.94	20.44
CDY03145	Canola	plastid	19.74	20.18
CDX83563	Canola	plastid	20.39	19.96
CDY13593	Canola	plastid	20.39	19.92
CDY04184	Canola	plastid	20.39	19.83
CDX95323	Canola	mitochondrion	27.04	19.66
CDY39183	Canola	plastid	19.74	19.49
CDY12039	Canola	plastid	18.67	19.33
CDX74077	Canola	mitochondrion, plastid	19.74	19.25
CDY08029	Canola	mitochondrion	19.96	19.18
CDY23199	Canola	mitochondrion, plastid	26.82	18.14
Os01t0314100-01	Rice	mitochondrion	19.96	17.78
CDY34925	Canola	mitochondrion	6.44	11.67
CDY69187	Canola	cytosol, nucleus	3.43	2.54
CDY17299	Canola	cytosol, plastid	3.43	2.41
Os01t0314000-01	Rice	cytosol	0.86	0.75

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2	Gene3D:2.40.50.100
Gene3D:3.30.559.10	GO:A0A078F4L2	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	EnsemblPlants:CDY06613	ProteinID:CDY06613
ProteinID:CDY06613.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004149	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045252	EnsemblPlantsGene:GSBRNA2T00122756001
InterPro:IPR000089	InterPro:IPR023213	PFAM:PF00198	PFAM:PF00364	ScanProsite:PS00189	PFscan:PS50968
PANTHER:PTHR43416	PANTHER:PTHR43416:SF5	MetaCyc:PWY-5084	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif
InterPro:SucB	TIGRFAMs:TIGR01347	UniPathway:UPA00868	UniParc:UPI0004EDB0A4	SEG:seg	:

Description

BnaC02g13370D

Coordinates

chrLK031971:-:706386..709871

Molecular Weight (calculated)

50151.3 Da

IEP (calculated)

9.669

GRAVY (calculated)

-0.213

Length

466 amino acids

Sequence
(BLAST)

001: MMLRAVIRRA STRGGGSSAS GLGKSLQSSR VVASTTQSFH SLAATQTLVP RGTDARSFHH RSCPGCSECS SRTVFSSFQG TTLQKWVRPY SSDSGDVVEA
101: VVPHMGESIT DGTLANFLKK PGDRVEADEA IAQIETDKVT IDIASPASGV IQEFLVKEGD TVEPGNKVAI ISKSADAVSH VAPSEKVAEK PAAKPSPPAE
201: APKVESTKVA EKPKAPSPPP PTKQSAKEPQ LPPKDRERRV PMTRLRKRVA TRLKDSQNTF ALLTTFNEVD MTNLMKLRSQ YKDAFFEKHG VKLGLMSGFI
301: KAAVSALQAQ PVVNAVIDGD DIIYRDYVDI SIAVGTSKGL VVPVIRGADQ MNFADIEKTI NSLAKKANEG TISIDEMAGG SFTVSNGGVY GSLISTPIIN
401: PPQSAILGMH SIVQRPMVVG GSVVPRPMMY VALTYDHRLI DGREAVYFLR RIKDVVEDPQ RLLLDI

Best Arabidopsis Sequence Match ( AT4G26910.2 )
(BLAST)

001: MMMRAVIRRA ASNGSSPSLF AKSLQSSRVA ASSPSLLSGS ETGAYLHRGN HAHSFHNLAL PGNSGISRSA SLVSSTLQRW VRPFSAETGD TVEAVVPHMG
101: ESITDGTLAT FLKKPGERVQ ADEAIAQIET DKVTIDIASP ASGVIQEFLV NEGDTVEPGT KVAIISKSED TASQVTPSQK IPETTDTKPS PPAEDKQKPR
201: VESAPVAEKP KAPSSPPPPK QSAKEPQLPP KERERRVPMT RLRKRVATRL KDSQNTFALL TTFNEVDMTN LMKLRSQYKD AFYEKHGVKL GLMSGFIKAA
301: VSALQHQPVV NAVIDGDDII YRDYVDISIA VGTSKGLVVP VIRGADKMNF AEIEKTINSL AKKANEGTIS IDEMAGGSFT VSNGGVYGSL ISTPIINPPQ
401: SAILGMHSIV SRPMVVGGSV VPRPMMYVAL TYDHRLIDGR EAVYFLRRVK DVVEDPQRLL LDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8H107]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.