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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 1
  • mitochondrion 7
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 golgi: 25769308
mitochondrion: 26136264
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID: 26136264 doi
S Wang, G Zhang, Y Zhang, Q Song, Z Chen, J Wang, J Guo, N Niu, J Wang, S Ma
College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China zhanggaisheng18@sohu.com., College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China., Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P. R. China.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G26910.1 TraesCS6A01G274500.1 AT3G27960.1 21798944
AT4G26910.1 TraesCS6B01G302000.1 AT3G27960.1 21798944
AT4G26910.1 TraesCS6D01G254800.1 AT3G27960.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G041100.1 Wheat golgi, nucleus, unclear 99.78 99.78
TraesCS2B01G053600.1 Wheat mitochondrion 95.06 99.06
Os04t0394200-01 Rice mitochondrion 90.11 91.14
Zm00001d025258_P009 Maize mitochondrion 88.09 87.89
TraesCS4D01G070200.1 Wheat mitochondrion 83.37 84.7
OQU93042 Sorghum mitochondrion 87.42 83.3
Zm00001d003923_P002 Maize mitochondrion 88.09 82.88
Solyc12g005080.1.1 Tomato nucleus 63.82 76.76
VIT_19s0090g00750.t01 Wine grape cytosol 60.45 68.62
Bra035551.1-P Field mustard mitochondrion 66.07 67.59
AT5G55070.1 Thale cress mitochondrion 68.76 65.95
Bra002934.1-P Field mustard mitochondrion 68.76 65.67
CDY17300 Canola mitochondrion 68.76 65.67
KRH14369 Soybean nucleus 68.31 65.52
PGSC0003DMT400071652 Potato mitochondrion 69.21 65.39
KRH73773 Soybean mitochondrion 68.09 65.3
CDY19918 Canola mitochondrion 68.09 65.3
Solyc07g064800.2.1 Tomato extracellular, nucleus 68.54 65.17
CDY06613 Canola mitochondrion 68.09 65.02
CDY20790 Canola mitochondrion 67.64 64.73
VIT_10s0116g01480.t01 Wine grape mitochondrion 68.76 64.69
PGSC0003DMT400057449 Potato mitochondrion 67.87 64.53
AT4G26910.1 Thale cress mitochondrion 65.62 62.93
Bra028992.1-P Field mustard mitochondrion 67.19 60.53
GSMUA_Achr10P... Banana cytosol, mitochondrion, plastid 13.48 59.41
CDY21016 Canola mitochondrion, plastid 63.37 59.24
Bra016809.1-P Field mustard mitochondrion, plastid 63.15 59.16
CDY31217 Canola mitochondrion, plastid 63.82 59.04
CDY12012 Canola plastid 68.09 58.05
CDY36727 Canola plastid 67.87 56.45
TraesCS7D01G011600.1 Wheat golgi, mitochondrion 27.42 22.55
TraesCS7D01G301900.1 Wheat golgi 26.29 22.33
TraesCS6D01G024400.1 Wheat golgi, mitochondrion 26.52 21.77
TraesCS5D01G126000.1 Wheat cytosol 18.2 19.85
TraesCS5D01G490000.1 Wheat golgi, plastid, unclear 21.12 19.83
TraesCS5D01G212800.1 Wheat plastid 20.0 19.22
TraesCS2D01G073400.1 Wheat mitochondrion 19.1 16.73
TraesCS5D01G125900.1 Wheat plastid 1.35 1.97
Protein Annotations
KEGG:00020+2.3.1.61KEGG:00310+2.3.1.61InterPro:2-oxoA_DH_lipoyl-BSInterPro:2-oxoacid_DH_actylTfraseMapMan:2.3.4.2Gene3D:2.40.50.100
Gene3D:3.30.559.10InterPro:Biotin_lipoylInterPro:CAT-like_dom_sfGO:GO:0003674GO:GO:0003824GO:GO:0004149
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006091GO:GO:0006099
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016740GO:GO:0016746GO:GO:0045252
InterPro:IPR000089InterPro:IPR023213PFAM:PF00198PFAM:PF00364ScanProsite:PS00189PFscan:PS50968
PANTHER:PTHR43416PANTHER:PTHR43416:SF5SUPFAM:SSF51230SUPFAM:SSF52777InterPro:Single_hybrid_motifInterPro:SucB
TIGRFAMs:TIGR01347EnsemblPlantsGene:TraesCS2D01G039500EnsemblPlants:TraesCS2D01G039500.2TIGR:cd06849SEG:seg:
Description
No Description!
Coordinates
chr2D:-:14401172..14405568
Molecular Weight (calculated)
48744.6 Da
IEP (calculated)
9.431
GRAVY (calculated)
-0.328
Length
445 amino acids
Sequence
(BLAST)
001: MASRIASRLL RRSSPTLGLL RSYTHVRNYS SQLSGLIPVG PQSSKLTRRN NYFPNASPYQ LWSRSFASDN GDKFEAVVPF MGESVTDGTL ANFLKKPGDR
101: VEADEAIAQI ETDKVTIDVS SPEAGVIEKF IASEGDTVTP GTIVAIVSKS AAPAETHVAP SEEAPQKESP PVKAEEKSPK AEEKPTKVEP PKKQAPKPTP
201: SKTSPTEPQL PPKERERRVP MPRLRKRIAN RLKDSQNTFA MLTTFNEVDM TNLMKLRSDY KDEFVKKHGV KLGLMSCFVK AAVSGLQNQP IVNAVIDGDD
301: IIYRDYVDVS VAVGTSKGLV VPVIRDADTM NFADIEKGIN NLAKKATEGA LSIDEMAGGT FTISNGGVYG SLISTPIINP PQSAILGMHS IVQRPVVVDG
401: SILARPMMYL ALTYDHRLID GREAVYFLRR IKDVVEDPRR LLLDI
Best Arabidopsis Sequence Match ( AT5G55070.1 )
(BLAST)
001: MMLRAVFRRA SIRGSSSASG LGKSLQSSRV AVSAQFHSVS ATETLVPRGN HAHSFHHRSC PGCPDCSRTI INGYQGTALQ RWVRPFSSDS GDVVEAVVPH
101: MGESITDGTL AAFLKKPGDR VEADEAIAQI ETDKVTIDIA SPASGVIQEF LVKEGDTVEP GNKVARISTS ADAVSHVAPS EKAPEKPAPK PSPPAEKPKV
201: ESTKVAEKPK APSPPPPPPS KQSAKEPQLP PKDRERRVPM TRLRKRVATR LKDSQNTFAL LTTFNEVDMT NLMKLRSQYK DAFLEKHGVK LGLMSGFIKA
301: AVSALQHQPV VNAVIDGDDI IYRDYVDISI AVGTSKGLVV PVIRDADKMN FADIEKTING LAKKATEGTI SIDEMAGGSF TVSNGGVYGS LISTPIINPP
401: QSAILGMHSI VQRPMVVGGS VVPRPMMYVA LTYDHRLIDG REAVYFLRRI KDVVEDPQRL LLDI
Arabidopsis Description
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLQ4]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.