Factsheet for TraesCS2A01G041100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, nucleus

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT4G26910.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT4G26910.1	TraesCS6D01G254800.1	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G039500.2	Wheat	mitochondrion	99.78	99.78
TraesCS2B01G053600.1	Wheat	mitochondrion	94.83	98.83
Os04t0394200-01	Rice	mitochondrion	89.89	90.91
Zm00001d025258_P009	Maize	mitochondrion	87.87	87.67
TraesCS4A01G243500.1	Wheat	golgi, mitochondrion, unclear	83.15	84.47
OQU93042	Sorghum	mitochondrion	87.19	83.08
Zm00001d003923_P002	Maize	mitochondrion	87.87	82.66
Solyc12g005080.1.1	Tomato	nucleus	63.6	76.49
VIT_19s0090g00750.t01	Wine grape	cytosol	60.22	68.37
Bra035551.1-P	Field mustard	mitochondrion	65.84	67.36
AT5G55070.1	Thale cress	mitochondrion	68.54	65.73
Bra002934.1-P	Field mustard	mitochondrion	68.54	65.45
CDY17300	Canola	mitochondrion	68.54	65.45
KRH14369	Soybean	nucleus	68.09	65.3
PGSC0003DMT400071652	Potato	mitochondrion	68.99	65.18
KRH73773	Soybean	mitochondrion	67.87	65.09
CDY19918	Canola	mitochondrion	67.87	65.09
Solyc07g064800.2.1	Tomato	extracellular, nucleus	68.31	64.96
CDY06613	Canola	mitochondrion	67.87	64.81
CDY20790	Canola	mitochondrion	67.42	64.52
VIT_10s0116g01480.t01	Wine grape	mitochondrion	68.54	64.48
PGSC0003DMT400057449	Potato	mitochondrion	67.64	64.32
AT4G26910.1	Thale cress	mitochondrion	65.39	62.72
Bra028992.1-P	Field mustard	mitochondrion	66.97	60.32
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	13.48	59.41
CDY21016	Canola	mitochondrion, plastid	63.15	59.03
Bra016809.1-P	Field mustard	mitochondrion, plastid	62.92	58.95
CDY31217	Canola	mitochondrion, plastid	63.6	58.84
CDY12012	Canola	plastid	67.87	57.85
CDY36727	Canola	plastid	67.64	56.26
TraesCS7A01G305100.1	Wheat	mitochondrion	25.17	25.34
TraesCS7A01G014600.4	Wheat	golgi, mitochondrion	26.97	22.18
TraesCS4A01G481800.3	Wheat	mitochondrion, unclear	26.74	22.08
TraesCS6A01G022600.2	Wheat	golgi	25.84	21.38
TraesCS5A01G476700.1	Wheat	plastid	21.12	19.83
TraesCS5A01G119600.1	Wheat	plastid	18.88	18.42
TraesCS5A01G206600.2	Wheat	plastid	17.3	16.59
TraesCS2A01G074700.1	Wheat	nucleus	18.65	16.24

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2	Gene3D:2.40.50.100
Gene3D:3.30.559.10	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004149
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045252
InterPro:IPR000089	InterPro:IPR023213	PFAM:PF00198	PFAM:PF00364	ScanProsite:PS00189	PFscan:PS50968
PANTHER:PTHR43416	PANTHER:PTHR43416:SF5	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	InterPro:SucB
TIGRFAMs:TIGR01347	EnsemblPlantsGene:TraesCS2A01G041100	EnsemblPlants:TraesCS2A01G041100.1	TIGR:cd06849	SEG:seg	:

Description

No Description!

Coordinates

chr2A:-:16672093..16677907

Molecular Weight (calculated)

48718.5 Da

IEP (calculated)

9.431

GRAVY (calculated)

-0.321

Length

445 amino acids

Sequence
(BLAST)

001: MASRIASRLL RRSSPTLGLL RSYTHVRNYS SQLSGLIPVG PQSSKLTRRN NYFPNASPYQ LWSRSFASDN GDKFEAVVPF MGESVTDGTL ANFLKKPGDR
101: VEADEAIAQI ETDKVTIDVS SPEAGVIEKF IASEGDTVTP GTIVAIVSKS AAPAETHVAP SEEAPQKESP PVKAEEKSPK AEEKPTKVEP PKKQAPKPTP
201: SKTSPTEPQL PPKERERRVA MPRLRKRIAN RLKDSQNTFA MLTTFNEVDM TNLMKLRSDY KDEFVKKHGV KLGLMSCFVK AAVSGLQNQP IVNAVIDGDD
301: IIYRDYVDVS VAVGTSKGLV VPVIRDADTM NFADIEKGIN NLAKKATEGA LSIDEMAGGT FTISNGGVYG SLISTPIINP PQSAILGMHS IVQRPVVVDG
401: SILARPMMYL ALTYDHRLID GREAVYFLRR IKDVVEDPRR LLLDI

Best Arabidopsis Sequence Match ( AT5G55070.1 )
(BLAST)

001: MMLRAVFRRA SIRGSSSASG LGKSLQSSRV AVSAQFHSVS ATETLVPRGN HAHSFHHRSC PGCPDCSRTI INGYQGTALQ RWVRPFSSDS GDVVEAVVPH
101: MGESITDGTL AAFLKKPGDR VEADEAIAQI ETDKVTIDIA SPASGVIQEF LVKEGDTVEP GNKVARISTS ADAVSHVAPS EKAPEKPAPK PSPPAEKPKV
201: ESTKVAEKPK APSPPPPPPS KQSAKEPQLP PKDRERRVPM TRLRKRVATR LKDSQNTFAL LTTFNEVDMT NLMKLRSQYK DAFLEKHGVK LGLMSGFIKA
301: AVSALQHQPV VNAVIDGDDI IYRDYVDISI AVGTSKGLVV PVIRDADKMN FADIEKTING LAKKATEGTI SIDEMAGGSF TVSNGGVYGS LISTPIINPP
401: QSAILGMHSI VQRPMVVGGS VVPRPMMYVA LTYDHRLIDG REAVYFLRRI KDVVEDPQRL LLDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLQ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.