CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05647

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	EES05647	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025258_P009	Maize	mitochondrion	87.79	91.93
Os04t0394200-01	Rice	mitochondrion	83.08	88.18
TraesCS2D01G039500.2	Wheat	mitochondrion	83.3	87.42
TraesCS2A01G041100.1	Wheat	golgi, nucleus, unclear	83.08	87.19
TraesCS2B01G053600.1	Wheat	mitochondrion	79.23	86.65
Zm00001d003923_P002	Maize	mitochondrion	87.58	86.47
Solyc12g005080.1.1	Tomato	nucleus	61.03	77.03
VIT_19s0090g00750.t01	Wine grape	cytosol	58.24	69.39
Bra035551.1-P	Field mustard	mitochondrion	63.6	68.28
PGSC0003DMT400071652	Potato	mitochondrion	66.81	66.24
AT5G55070.1	Thale cress	mitochondrion	65.52	65.95
Bra002934.1-P	Field mustard	mitochondrion	65.52	65.67
CDY06613	Canola	mitochondrion	65.52	65.67
CDY17300	Canola	mitochondrion	65.52	65.67
Solyc07g064800.2.1	Tomato	extracellular, nucleus	65.74	65.6
CDY20790	Canola	mitochondrion	65.1	65.38
VIT_10s0116g01480.t01	Wine grape	mitochondrion	66.17	65.33
CDY19918	Canola	mitochondrion	64.88	65.3
PGSC0003DMT400057449	Potato	mitochondrion	65.31	65.17
KRH14369	Soybean	nucleus	64.45	64.87
KRH73773	Soybean	mitochondrion	64.24	64.66
AT4G26910.1	Thale cress	mitochondrion	63.81	64.22
Bra028992.1-P	Field mustard	mitochondrion	64.67	61.13
CDY21016	Canola	mitochondrion, plastid	61.03	59.87
Bra016809.1-P	Field mustard	mitochondrion, plastid	60.81	59.79
CDY31217	Canola	mitochondrion, plastid	61.46	59.67
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	12.63	58.42
CDY12012	Canola	plastid	65.1	58.24
CDY36727	Canola	plastid	65.1	56.82
KXG37311	Sorghum	mitochondrion	26.12	25.21
EES04754	Sorghum	mitochondrion	26.98	23.38
OQU89472	Sorghum	plastid	20.13	20.48
OQU78843	Sorghum	plastid	18.84	19.21
EES15031	Sorghum	plastid	19.49	19.16
EES02874	Sorghum	mitochondrion	18.84	16.83

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2	Gene3D:2.40.50.100
Gene3D:3.30.559.10	UniProt:A0A1Z5SAV0	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0004149	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746
GO:GO:0045252	InterPro:IPR000089	InterPro:IPR023213	EnsemblPlants:OQU93042	ProteinID:OQU93042	ProteinID:OQU93042.1
PFAM:PF00198	PFAM:PF00364	ScanProsite:PS00189	PFscan:PS50968	PANTHER:PTHR43416	PANTHER:PTHR43416:SF5
EnsemblPlantsGene:SORBI_3001G465400	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	InterPro:SucB	TIGRFAMs:TIGR01347
UniParc:UPI0001C80B72	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:73915906..73926140

Molecular Weight (calculated)

51165.6 Da

IEP (calculated)

8.793

GRAVY (calculated)

-0.303

Length

467 amino acids

Sequence
(BLAST)

001: MASAAMLRSA ARSLRLRLRQ PLEQQRCLQA RQILSSSAPT EALGLQRSST HARSYSSQLS ATSQCSNLTR KSCYLPNPYL YQVWSRSFAS DNGDKFEAVV
101: PFMGESVTDG TLANFLKKPG DRVEADEPIA QIETDKVTID VASPEAGVIE KLIASEGDTV TPGTKVAIIS KSAQPAETHV APSEEATPKE SSTPKVEEKP
201: KVEEKAPKVE PPKMQAPKPT APSKMSPSEP QLPPKERERR VPMPRLRKRI ANRLKDSQNT FAMLTTFNEV DMTNLMKLRS DYKDEFVTKH GVKLGLMSCF
301: VKAAVSALQN QPIVNAVIDG DDIIYRDYVD VSVAVGTSKG LVVPVIRDAD TMNFADIEKG INNLAKKATE GALSIDDMAG GTFTISNGGV YGSLISTPII
401: NPPQSAILGM HSIVQRPVVV NGDILARPMM YLALTYDHRL IDGREAVFFL RRIKDVVEDP RRLLLDI

Best Arabidopsis Sequence Match ( AT5G55070.1 )
(BLAST)

001: MMLRAVFRRA SIRGSSSASG LGKSLQSSRV AVSAQFHSVS ATETLVPRGN HAHSFHHRSC PGCPDCSRTI INGYQGTALQ RWVRPFSSDS GDVVEAVVPH
101: MGESITDGTL AAFLKKPGDR VEADEAIAQI ETDKVTIDIA SPASGVIQEF LVKEGDTVEP GNKVARISTS ADAVSHVAPS EKAPEKPAPK PSPPAEKPKV
201: ESTKVAEKPK APSPPPPPPS KQSAKEPQLP PKDRERRVPM TRLRKRVATR LKDSQNTFAL LTTFNEVDMT NLMKLRSQYK DAFLEKHGVK LGLMSGFIKA
301: AVSALQHQPV VNAVIDGDDI IYRDYVDISI AVGTSKGLVV PVIRDADKMN FADIEKTING LAKKATEGTI SIDEMAGGSF TVSNGGVYGS LISTPIINPP
401: QSAILGMHSI VQRPMVVGGS VVPRPMMYVA LTYDHRLIDG REAVYFLRRI KDVVEDPQRL LLDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLQ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.