CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88061
EER94980
EES08772
EES12747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34430.1	EER88061	AT2G47400.1	21798944
AT1G34430.1	EER94980	AT2G47400.1	21798944
AT1G34430.1	EES12747	AT3G17668.1	21798944
AT1G34430.1	EES08772	AT3G18140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023606_P005	Maize	plastid	95.41	95.62
TraesCS5D01G126000.1	Wheat	cytosol	80.79	90.69
TraesCS5B01G116300.1	Wheat	golgi, unclear	88.65	88.45
TraesCS5A01G119600.1	Wheat	plastid	87.99	88.38
Os12t0182200-01	Rice	plastid	88.21	86.51
KRH34962	Soybean	plastid	74.45	72.71
KRG91819	Soybean	endoplasmic reticulum, nucleus	73.58	72.47
Zm00001d041839_P001	Maize	plastid	93.45	72.18
Solyc11g017250.1.1	Tomato	plastid	72.49	70.94
VIT_18s0072g01000.t01	Wine grape	plastid	73.8	70.86
PGSC0003DMT400023831	Potato	plastid	70.96	70.04
AT1G34430.1	Thale cress	plastid	70.09	69.03
HORVU5Hr1G038090.3	Barley	plastid	64.85	68.91
EES15031	Sorghum	plastid	68.78	66.32
OQU89472	Sorghum	plastid	63.32	63.18
GSMUA_Achr3P17420_001	Banana	cytosol	33.84	62.25
EES04754	Sorghum	mitochondrion	30.57	25.97
KXG37311	Sorghum	mitochondrion	26.86	25.41
EES02874	Sorghum	mitochondrion	22.27	19.5
OQU93042	Sorghum	mitochondrion	19.21	18.84
CDY34925	Canola	mitochondrion	10.48	18.68
Bra040295.1-P	Field mustard	mitochondrion	10.48	18.68
TraesCS5D01G125900.1	Wheat	plastid	2.18	3.28
CDY69187	Canola	cytosol, nucleus	0.0	0.0
CDY17299	Canola	cytosol, plastid	0.0	0.0

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
EntrezGene:8054103	UniProt:A0A1Z5R4Y7	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	InterPro:IPR000089
InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	EnsemblPlants:OQU78843	ProteinID:OQU78843	ProteinID:OQU78843.1
PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826
InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF61	EnsemblPlantsGene:SORBI_3008G059900	SUPFAM:SSF47005	SUPFAM:SSF51230
SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI0001A88021	RefSeq:XP_002442933.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:6382390..6387230

Molecular Weight (calculated)

47688.3 Da

IEP (calculated)

7.566

GRAVY (calculated)

-0.008

Length

458 amino acids

Sequence
(BLAST)

001: MAGLLNLQST LLPSASALRR RAGAPGPSSS RRRCRVEAKI REIFMPALSS TMTEGKIVSW TAAEGDRLAK GDPVVVVESD KADMDVETFH DGFLAAVLVP
101: AGESAPVGSA IALLAESEEE IPVAQSQAAS FSSSSPSPPP PQETAAQEES LPPPPPPTPA PVAVSAPAPP SPAAQGGGRV VASPYAKKLA KDLGVDLFSV
201: TGSGPGGRIV AKDVESALAA PKKAVPATAA RPDVPLGSTV PFTTMQGAVS KNMVESLAVP TFRVGYTITT DALDQLYKKI KSKGVTMSAL LAKATAMALV
301: QHPVVNSSCR DGKSFTYNSS INIAVAVAID GGLITPVLQD ADKLDIYSLS RKWKELVDKA RAKQLQPHEY NSGTFTLSNL GMFGVDRFDA ILPPGTGAIM
401: AVGASEPTIV GTKDGRIGIK NQMQVNVTAD HRIIYGADLA AFLQTLAKII EDPKDLTF

Best Arabidopsis Sequence Match ( AT1G34430.1 )
(BLAST)

001: MSRLLQTPFL PSVSLPTKTR SSVTGFRVKP RIIPIQAKIR EIFMPALSST MTEGKIVSWV KSEGDKLNKG ESVVVVESDK ADMDVETFYD GYLAAIMVEE
101: GGVAPVGSAI ALLAETEDEI ADAKAKASGG GGGGDSKAPP ASPPTAAVEA PVSVEKKVAA APVSIKAVAA SAVHPASEGG KRIVASPYAK KLAKELKVEL
201: AGLVGSGPMG RIVAKDVEAV AAGGGVQAAV AVKEVVAAPG VELGSVVPFT TMQGAVSRNM VESLGVPTFR VGYTISTDAL DALYKKIKSK GVTMTALLAK
301: ATALALAKHP VVNSSCRDGN SFVYNSSINV AVAVAIDGGL ITPVLQNADK VDIYSLSRKW KELVDKARAK QLQPQEYNTG TFTLSNLGMF GVDRFDAILP
401: PGTGAIMAVG ASQPSVVATK DGRIGMKNQM QVNVTADHRV IYGADLAQFL QTLASIIEDP KDLTF

Arabidopsis Description

EMB3003Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.