CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG28376

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18140.1	KXG28376	AT2G16370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007577_P001	Maize	extracellular, mitochondrion	99.68	99.68
HORVU4Hr1G003940.2	Barley	cytosol	98.73	98.73
TraesCS4B01G026200.1	Wheat	cytosol	98.42	98.42
TraesCS4A01G288600.1	Wheat	cytosol	98.42	98.42
TraesCS4D01G023600.1	Wheat	cytosol	98.1	98.1
GSMUA_Achr10P...	Banana	cytosol	94.94	94.94
Os03t0681700-01	Rice	plasma membrane	94.62	94.62
KRH11050	Soybean	cytosol	91.14	91.14
KRH21226	Soybean	cytosol	90.82	90.82
Solyc03g059310.2.1	Tomato	cytosol	64.56	87.18
Bra022283.1-P	Field mustard	cytosol	66.14	85.66
CDX92201	Canola	cytosol	82.28	85.25
VIT_06s0004g04740.t01	Wine grape	cytosol	85.13	85.13
AT3G18140.1	Thale cress	cytosol	81.96	84.92
CDX95783	Canola	cytosol	81.96	84.92
VIT_08s0007g08080.t01	Wine grape	cytosol, plastid	88.29	78.81
AT2G22040.1	Thale cress	cytosol	67.72	68.37
CDY13785	Canola	cytosol	54.43	65.65
CDY13786	Canola	cytosol	53.48	64.02
CDX76957	Canola	cytosol	64.87	62.5
Bra031226.1-P	Field mustard	cytosol	64.56	61.63

Protein Annotations

Gene3D:2.130.10.10	MapMan:27.7.1.3	EntrezGene:8065843	UniProt:C5Y5G8	EnsemblPlants:EES08772	ProteinID:EES08772
ProteinID:EES08772.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0031929	GO:GO:0031931	GO:GO:0031932	GO:GO:0032008	GO:GO:0032956
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:MLST8	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19842	PANTHER:PTHR19842:SF0	InterPro:Quinoprotein_ADH-like_supfam
SMART:SM00320	EnsemblPlantsGene:SORBI_3005G172500	SUPFAM:SSF50998	unigene:Sbi.3984	UniParc:UPI0001A863C3	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	RefSeq:XP_002449784.1	:	:

Description

hypothetical protein

Coordinates

chr5:+:65204194..65208355

Molecular Weight (calculated)

35299.6 Da

IEP (calculated)

6.631

GRAVY (calculated)

-0.263

Length

316 amino acids

Sequence
(BLAST)

001: MAQPSVILAT ASYDHTIRFW EAKSGRCYRT IQYPDSQVNR LEITPDKRFL AAAGNPHIRL FDVNSNSPQP VISYDSHTSN VMAVGFHCDG NWMYSGSEDG
101: TVRIWDLRTG TCQREYESRA AVNTVVLHPN QKELISGDQN GNIRVWDLAA NSCSCELVPE VDTAVRSLTV MWDGSMVVAA NNRGTCYVWR LLKGTQTITC
201: FEPLHKLQAH DGYILKCLLS PEFCDPNRYL ATASSDHTVK IWNVDGFKLE RTLVGHQRWV WDCVFSVDGA YLITASSDTT ARLWTMSTGE AIRVYQGHHK
301: ATVCCALHDG AESAPS

Best Arabidopsis Sequence Match ( AT3G18140.1 )
(BLAST)

001: MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL AAACNPHIRL FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG
101: TVKIWDLRAP GCQKEYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA NSCSCELVPE VDTAVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
201: FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC
301: CALHD

Arabidopsis Description

LST8-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VME6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.