Factsheet for VIT_06s0004g04740.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04500.t01
VIT_04s0008g04950.t01
VIT_18s0001g12940.t01
VIT_18s0075g01010.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18140.1	VIT_03s0038g04500.t01	AT2G16370.1	21798944
AT3G18140.1	VIT_18s0001g12940.t01	AT2G16370.1	21798944
AT3G18140.1	VIT_18s0075g01010.t01	AT2G16370.1	21798944
AT3G18140.1	VIT_04s0008g04950.t01	AT4G32570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G023600.1	Wheat	cytosol	85.13	85.13
HORVU4Hr1G003940.2	Barley	cytosol	85.13	85.13
EES08772	Sorghum	cytosol	85.13	85.13
Zm00001d007577_P001	Maize	extracellular, mitochondrion	84.81	84.81
TraesCS4B01G026200.1	Wheat	cytosol	84.81	84.81
TraesCS4A01G288600.1	Wheat	cytosol	84.81	84.81
GSMUA_Achr10P...	Banana	cytosol	83.86	83.86
Os03t0681700-01	Rice	plasma membrane	83.54	83.54
AT3G18140.1	Thale cress	cytosol	79.75	82.62
CDX92201	Canola	cytosol	79.43	82.3
CDX95783	Canola	cytosol	79.11	81.97
Bra022283.1-P	Field mustard	cytosol	61.71	79.92
VIT_08s0007g08080.t01	Wine grape	cytosol, plastid	84.81	75.71
AT2G22040.1	Thale cress	cytosol	65.19	65.81
CDY13785	Canola	cytosol	51.9	62.6
CDY13786	Canola	cytosol	50.95	60.98
CDX76957	Canola	cytosol	62.97	60.67
Bra031226.1-P	Field mustard	cytosol	62.34	59.52

Protein Annotations

EntrezGene:100265539	wikigene:100265539	Gene3D:2.130.10.10	MapMan:27.7.1.3	ProteinID:CBI16130	ProteinID:CBI16130.3
UniProt:D7SKF4	EMBL:FN594951	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0031929	GO:GO:0031931	GO:GO:0031932	GO:GO:0032008
GO:GO:0032956	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100265539	wikigene:LOC100265539
InterPro:MLST8	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19842	PANTHER:PTHR19842:SF0	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998	UniParc:UPI00015C7600
ArrayExpress:VIT_06s0004g04740	EnsemblPlantsGene:VIT_06s0004g04740	EnsemblPlants:VIT_06s0004g04740.t01	unigene:Vvi.17551	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	RefSeq:XP_002283718	RefSeq:XP_002283718.1	RefSeq:XP_010651017.1	:

Description

No Description!

Coordinates

chr6:-:5674891..5678603

Molecular Weight (calculated)

35361.5 Da

IEP (calculated)

6.115

GRAVY (calculated)

-0.278

Length

316 amino acids

Sequence
(BLAST)

001: MAQPSVILAT ASYDHTIKFW EAESGRCYRT IQYPEFNVNR LDITPNKKYL AAAGNPHIRL FDINSSGHQP IMSYDSHTNN VTAVGFQCDG NWMYSGSEDG
101: TVKIWDLRAP GCQREYESRA AVNTVVLHPN QTELISGDQN GNIRVWDLIA NSCSCELVPE EDTAVRSLTV MWDGSLVVAA NNRGTCYVWR LLRGTQTMTN
201: FEPLHKLQAH SGYILKCLLS PELCDPQRYL ATASSDHTVK IWNVDGFTLE KTLIGHQRWV WDCVFSANGE YLITASSDTT ARLWTLSTAE AIRVFNGHHK
301: ATVCCALNDG PEYLSS

Best Arabidopsis Sequence Match ( AT3G18140.1 )
(BLAST)

001: MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL AAACNPHIRL FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG
101: TVKIWDLRAP GCQKEYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA NSCSCELVPE VDTAVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
201: FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC
301: CALHD

Arabidopsis Description

LST8-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VME6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.