Factsheet for VIT_18s0001g12940.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72487	Canola	cytosol	29.68	79.68
VIT_18s0075g01010.t01	Wine grape	cytosol, mitochondrion	12.75	73.56
Bra011543.1-P	Field mustard	cytosol	72.11	72.55
Os11t0484400-01	Rice	cytosol, plasma membrane, plastid	74.3	71.59
CDY45317	Canola	cytosol	70.72	71.43
CDX89705	Canola	cytosol	73.11	71.4
Os12t0446900-01	Rice	cytosol	73.9	71.21
Zm00001d007318_P001	Maize	cytosol	74.1	71.13
AT2G16370.1	Thale cress	cytosol	73.31	70.91
Bra017662.1-P	Field mustard	cytosol	70.92	70.63
Zm00001d030396_P001	Maize	cytosol	38.84	68.42
Zm00001d050448_P001	Maize	cytosol	38.45	67.72
CDX69070	Canola	mitochondrion, plastid	71.91	65.64
AT4G34570.1	Thale cress	mitochondrion	73.11	64.96
KXG28376	Sorghum	mitochondrion, plastid	74.3	64.09
Zm00001d049188_P008	Maize	mitochondrion	73.9	63.75
TraesCS2A01G518600.1	Wheat	mitochondrion, plastid	73.11	63.72
TraesCS2D01G520000.1	Wheat	plastid	72.91	63.54
CDX75443	Canola	mitochondrion	71.71	63.27
TraesCS2B01G547000.1	Wheat	plastid	72.71	63.26
VIT_03s0038g04500.t01	Wine grape	golgi	79.28	63.17
GSMUA_Achr2P14300_001	Banana	cytosol	61.55	61.19
HORVU2Hr1G114640.8	Barley	cytosol, plastid	72.51	60.07
Bra013079.1-P	Field mustard	cytosol	72.11	58.58
CDY02264	Canola	cytosol	71.71	58.25
CDX83194	Canola	cytosol	45.02	52.8
Bra000581.1-P	Field mustard	cytosol	47.21	52.43
AT2G21550.1	Thale cress	cytosol, plasma membrane, plastid	51.0	52.03
CDY21464	Canola	cytosol	28.69	47.37

Protein Annotations

KEGG:00240+2.1.1.45	KEGG:00670+1.5.1.3	KEGG:00670+1.5.1.3+2.1.1.45	KEGG:00670+2.1.1.45	KEGG:00790+1.5.1.3	EntrezGene:100255872
wikigene:100255872	Gene3D:3.30.572.10	Gene3D:3.40.430.10	MapMan:6.3.1.2	MapMan:7.5.5	ProteinID:CCB45969
ProteinID:CCB45969.1	InterPro:DHFR-TS	InterPro:DHFR-like_dom_sf	InterPro:DHFR_CS	InterPro:DHFR_dom	UniProt:F6H1I8
EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0004146	GO:GO:0004799	GO:GO:0006139
GO:GO:0006231	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009058	GO:GO:0009165	GO:GO:0009987	GO:GO:0016491	GO:GO:0016740	GO:GO:0032259
GO:GO:0046654	GO:GO:0055114	InterPro:IPR001796	InterPro:IPR024072	InterPro:IPR036926	EntrezGene:LOC100255872
wikigene:LOC100255872	HAMAP:MF_00008	PFAM:PF00186	PFAM:PF00303	PIRSF:PIRSF000389	PRINTS:PR00108
ScanProsite:PS00075	ScanProsite:PS00091	PFscan:PS51330	PANTHER:PTHR11548	PANTHER:PTHR11548:SF7	SUPFAM:SSF53597
SUPFAM:SSF55831	TIGRFAMs:TIGR03284	InterPro:Thymidate_synth/dCMP_Mease	InterPro:Thymidate_synth/dCMP_Mease_sf	InterPro:Thymidylate_synthase	InterPro:Thymidylate_synthase_AS
UniParc:UPI000210921C	ArrayExpress:VIT_18s0001g12940	EnsemblPlantsGene:VIT_18s0001g12940	EnsemblPlants:VIT_18s0001g12940.t01	RefSeq:XP_002281129	RefSeq:XP_002281129.1

Description

Bifunctional dihydrofolate reductase-thymidylate synthase [Source:UniProtKB/TrEMBL;Acc:F6H1I8]

Coordinates

chr18:-:11025678..11029403

Molecular Weight (calculated)

56644.0 Da

IEP (calculated)

8.583

GRAVY (calculated)

-0.088

Length

502 amino acids

Sequence
(BLAST)

001: MGIGKDGKLP WNLPSDLKFF KELTMTTSDP GKKNAVVMGR KTWESIPLNY RPLPGRLNVV LTRSGSFDNA TVENVVICGS MPSALKLLAE SPYCLSIDKV
101: FVIGGGQILR EALNAPGCDA IHITKIETSI ECDTFIPTID TSVFHPWYSS VPLLENNILY SFVTYVRVRS SALESFALSS GVNFNGGSVP NKLKIQGFTF
201: LPKMIFERHD EFMYLRQLKE IISSGAHKAD KTGTGTVSKF GCQMRFNLRL SFPLLTTKRV FWRGVVEELL WFISGSTNAK VLQKKDIHIW DGNASREYLD
301: RQLLGYWNLI GLTDREEGDL GPIYGFQWRH FGARYTNMHA DYMGKGFDQL LDVIDKIKNK PDDRRIILSS WNPSDLKLMA LPPCHMFAQF YVANGELSCQ
401: MYQRSADMGL GVPFNIASYA LLTCMIAHVC GILPGDFILI IGDAHIYKTH IRPLEEQLQK LPKPFPILKI NPQKKDIESF VAADFELIGY NPHQKIEMKM
501: SV

Best Arabidopsis Sequence Match ( AT2G16370.1 )
(BLAST)

001: MATTTLNDSV TTTLASEPQR TYQVVVAATK EMGIGKDGKL PWNLPTDLKF FKDITLTTSD SSKKNAVVMG RKTWESIPIK YRPLSGRLNV VLTRSGGFDI
101: ANTENVVTCS SVDSALDLLA APPYCLSIER VFVIGGGDIL REALNRPSCD AIHLTEIDTS VDCDTFIPAI DTSVYQPWSS SFPVTENGLR FCFTTFVRVK
201: SSADESSDES NGSQSLQFDG KKFLFLPKMV FDQHEEFLYL NMVEDIISNG NVKNDRTGTG TLSKFGCQMK FNLRRSFPLL TTKRVFWRGV VEELLWFISG
301: STNAKVLQEK GIHIWDGNAS REYLDGIGLT EREEGDLGPV YGFQWRHFGA KYTDMHADYT GQGFDQLVDV IDKIKNNPDD RRIIMSAWNP SDLKLMALPP
401: CHMFAQFYVA EGELSCQMYQ RSADMGLGVP FNIASYSLLT CMLAHVCDLV PGDFIHVLGD AHVYKTHVRP LQEQLLNLPK PFPVMKINPE KKQIDSFVAS
501: DFDLTGYDPH KKIEMKMAV

Arabidopsis Description

THY-1Bifunctional dihydrofolate reductase-thymidylate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q05762]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.