CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72487	Canola	cytosol	32.3	88.77
AT2G16370.1	Thale cress	cytosol	87.55	86.71
CDY45317	Canola	cytosol	78.99	81.69
CDX69070	Canola	mitochondrion, plastid	82.1	76.73
CDY02264	Canola	cytosol	91.83	76.38
KRH29421	Soybean	cytosol	76.46	74.43
KRH24440	Soybean	cytosol, nucleus	76.07	73.77
Os11t0484400-01	Rice	cytosol, plasma membrane, plastid	74.71	73.7
Os12t0446900-01	Rice	cytosol	74.71	73.7
CDX75443	Canola	mitochondrion	81.52	73.64
Zm00001d007318_P001	Maize	cytosol	74.9	73.61
PGSC0003DMT400001937	Potato	cytosol	75.29	73.43
KRH60811	Soybean	nucleus	75.68	73.4
Solyc01g109830.2.1	Tomato	cytosol	75.1	73.24
VIT_18s0001g12940.t01	Wine grape	cytosol	71.4	73.11
KRH51504	Soybean	nucleus	75.49	68.31
Zm00001d030396_P001	Maize	cytosol	37.16	67.02
KXG28376	Sorghum	mitochondrion, plastid	75.1	66.32
Zm00001d050448_P001	Maize	cytosol	36.77	66.32
Zm00001d049188_P008	Maize	mitochondrion	74.71	65.98
TraesCS2B01G547000.1	Wheat	plastid	72.76	64.82
TraesCS2A01G518600.1	Wheat	mitochondrion, plastid	72.57	64.76
TraesCS2D01G520000.1	Wheat	plastid	72.37	64.58
VIT_18s0075g01010.t01	Wine grape	cytosol, mitochondrion	10.7	63.22
VIT_03s0038g04500.t01	Wine grape	golgi	76.26	62.22
GSMUA_Achr2P14300_001	Banana	cytosol	60.51	61.58
HORVU2Hr1G114640.8	Barley	cytosol, plastid	72.57	61.55
CDX83194	Canola	cytosol	47.86	57.48
CDY21464	Canola	cytosol	30.16	50.99
Os11t0615250-00	Rice	cytosol	8.95	41.44

Protein Annotations

KEGG:00240+2.1.1.45	KEGG:00670+1.5.1.3	KEGG:00670+1.5.1.3+2.1.1.45	KEGG:00670+2.1.1.45	KEGG:00790+1.5.1.3	Gene3D:3.30.572.10
Gene3D:3.40.430.10	MapMan:6.3.1.2	MapMan:7.5.5	GO:A0A078DKK7	EnsemblPlants:CDX89705	ProteinID:CDX89705
ProteinID:CDX89705.1	InterPro:DHFR-TS	InterPro:DHFR-like_dom_sf	InterPro:DHFR_CS	InterPro:DHFR_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004146	GO:GO:0004799	GO:GO:0006139	GO:GO:0006231	GO:GO:0006730
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046654
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00150111001	InterPro:IPR001796	InterPro:IPR024072	InterPro:IPR036926	HAMAP:MF_00008
PFAM:PF00186	PFAM:PF00303	PIRSF:PIRSF000389	PRINTS:PR00108	ScanProsite:PS00075	ScanProsite:PS00091
PFscan:PS51330	PANTHER:PTHR11548	PANTHER:PTHR11548:SF7	MetaCyc:PWY-3841	MetaCyc:PWY-6614	MetaCyc:PWY-7184
MetaCyc:PWY-7187	MetaCyc:PWY-7198	MetaCyc:PWY-7199	MetaCyc:PWY-7210	SUPFAM:SSF53597	SUPFAM:SSF55831
TIGRFAMs:TIGR03284	InterPro:Thymidate_synth/dCMP_Mease	InterPro:Thymidate_synth/dCMP_Mease_sf	InterPro:Thymidylate_synthase	InterPro:Thymidylate_synthase_AS	UniPathway:UPA00077
UniPathway:UPA00575	UniParc:UPI0004EAC773	:	:	:	:

Description

BnaC03g46190D

Coordinates

chrLK031860:-:939465..941930

Molecular Weight (calculated)

57597.9 Da

IEP (calculated)

6.394

GRAVY (calculated)

-0.255

Length

514 amino acids

Sequence
(BLAST)

001: MTTTLNGDSN TIDPQRTYQV VVAATKQMGI GKDGKLPWNL PTDLKFFKDI TQTTSDPSKK NAVVMGRKTW EAIPAKHRPL PGRLNVVLTR SGGFDIANTE
101: NVVTCSSVDS ALHLLAAPPY CLSIERVFVI GGGDILREAL NRPSCDAIHL TEIDTSIECD TFIPEVDACV YQPWCSSLPI TENGLRFCFT SFVRVKSSAD
201: DESSNGSQSP LQFDGKKFSF LPKMVFDQHE EFRYLNMVGD IISHGNVKND RTGTGTLSKF GTQMKFNLRR SFPLLTTKRV FWRGVLEELL WFISGSTNAK
301: VLQEKGIHIW DGNASREYLD GIGLTEREEG DLGPVYGFQW RHFGAKYTDM HADYTGQGFD QLADVIDKMK NNPDDRRIIL SAWNPSDLKL MALPPCHMFA
401: QFYVAEGELS CQMYQRSADM GLGVPFNIAS YSLLTCMLAH VCELVPGDFV HVIGDAHVYR THVRPLQEQL QNPPKPFPVL KINAEKKDID SFVAADFDLI
501: GYEPHKKIEM KMAV

Best Arabidopsis Sequence Match ( AT2G16370.1 )
(BLAST)

001: MATTTLNDSV TTTLASEPQR TYQVVVAATK EMGIGKDGKL PWNLPTDLKF FKDITLTTSD SSKKNAVVMG RKTWESIPIK YRPLSGRLNV VLTRSGGFDI
101: ANTENVVTCS SVDSALDLLA APPYCLSIER VFVIGGGDIL REALNRPSCD AIHLTEIDTS VDCDTFIPAI DTSVYQPWSS SFPVTENGLR FCFTTFVRVK
201: SSADESSDES NGSQSLQFDG KKFLFLPKMV FDQHEEFLYL NMVEDIISNG NVKNDRTGTG TLSKFGCQMK FNLRRSFPLL TTKRVFWRGV VEELLWFISG
301: STNAKVLQEK GIHIWDGNAS REYLDGIGLT EREEGDLGPV YGFQWRHFGA KYTDMHADYT GQGFDQLVDV IDKIKNNPDD RRIIMSAWNP SDLKLMALPP
401: CHMFAQFYVA EGELSCQMYQ RSADMGLGVP FNIASYSLLT CMLAHVCDLV PGDFIHVLGD AHVYKTHVRP LQEQLLNLPK PFPVMKINPE KKQIDSFVAS
501: DFDLTGYDPH KKIEMKMAV

Arabidopsis Description

THY-1Bifunctional dihydrofolate reductase-thymidylate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q05762]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.