CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83194	Canola	cytosol	84.87	60.28
CDX72487	Canola	cytosol	30.26	49.2
AT2G21550.1	Thale cress	cytosol, plasma membrane, plastid	71.71	44.31
CDY45317	Canola	cytosol	53.29	32.6
KRH29421	Soybean	cytosol	53.95	31.06
KRH24440	Soybean	cytosol, nucleus	53.29	30.57
CDX89705	Canola	cytosol	50.99	30.16
Os12t0446900-01	Rice	cytosol	50.99	29.75
CDX69070	Canola	mitochondrion, plastid	53.62	29.64
PGSC0003DMT400001937	Potato	cytosol	50.99	29.41
Zm00001d007318_P001	Maize	cytosol	50.33	29.25
KRH60811	Soybean	nucleus	50.99	29.25
Solyc01g109830.2.1	Tomato	cytosol	50.33	29.03
Os11t0484400-01	Rice	cytosol, plasma membrane, plastid	49.34	28.79
VIT_18s0001g12940.t01	Wine grape	cytosol	47.37	28.69
CDX75443	Canola	mitochondrion	53.29	28.47
KRH51504	Soybean	nucleus	50.99	27.29
TraesCS2B01G547000.1	Wheat	plastid	50.33	26.52
Zm00001d049188_P008	Maize	mitochondrion	50.33	26.29
TraesCS2A01G518600.1	Wheat	mitochondrion, plastid	49.67	26.22
TraesCS2D01G520000.1	Wheat	plastid	49.67	26.22
KXG28376	Sorghum	mitochondrion, plastid	50.0	26.12
VIT_03s0038g04500.t01	Wine grape	golgi	53.62	25.87
CDY02264	Canola	cytosol	51.64	25.4
HORVU2Hr1G114640.8	Barley	cytosol, plastid	50.33	25.25
Os11t0615250-00	Rice	cytosol	7.89	21.62
GSMUA_Achr2P14300_001	Banana	cytosol	34.21	20.59
Zm00001d030396_P001	Maize	cytosol	17.76	18.95
Zm00001d050448_P001	Maize	cytosol	17.76	18.95
VIT_18s0075g01010.t01	Wine grape	cytosol, mitochondrion	0.0	0.0

Protein Annotations

KEGG:00240+2.1.1.45	KEGG:00670+1.5.1.3+2.1.1.45	KEGG:00670+2.1.1.45	KEGG:00790+1.5.1.3	Gene3D:3.30.572.10	MapMan:6.3.1.2
MapMan:7.5.5	GO:A0A078G7S1	UniProt:A0A078G7S1	EnsemblPlants:CDY21464	ProteinID:CDY21464	ProteinID:CDY21464.1
InterPro:DHFR-TS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004146	GO:GO:0004799	GO:GO:0006139
GO:GO:0006231	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0032259	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00015870001	InterPro:IPR036926	PFAM:PF00303
PRINTS:PR00108	PANTHER:PTHR11548	PANTHER:PTHR11548:SF7	MetaCyc:PWY-3841	MetaCyc:PWY-7184	MetaCyc:PWY-7187
MetaCyc:PWY-7198	MetaCyc:PWY-7199	MetaCyc:PWY-7210	SUPFAM:SSF55831	TIGRFAMs:TIGR03284	InterPro:Thymidate_synth/dCMP_Mease
InterPro:Thymidate_synth/dCMP_Mease_sf	InterPro:Thymidylate_synthase	UniPathway:UPA00575	UniParc:UPI0004EE4AAE	:	:

Description

BnaC03g27330DBnaC03g27330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7S1]

Coordinates

chrLK032121:+:318255..320014

Molecular Weight (calculated)

34066.6 Da

IEP (calculated)

5.767

GRAVY (calculated)

-0.146

Length

304 amino acids

Sequence
(BLAST)

001: MTQIKFTSQH PLLISSSWTN ERNPTGSGVE AEQYSFLPKM VFERHEEFGY LNLVQNIISN GDMNDNNTLL SKFGCQLRFN LRKTFPLLTT KACLLYPFIF
101: WVGVVKEILQ LISGSTYPKE KGINHICESD KAKEYLDSFG VNATEEDGDH PLLTGLYWSY SDASQEFSQI SDVINKIKNN PHDRGITLSA CKLSISPCQT
201: FAQFYVANGE LSCQIYQSST EASLGIPFSI AAYSLLTCIM AHVCDVVAGD FIHLIGDAHV NTSHTKAIQR QLQISQKPFP ILKINPEKTK IDHLEASDLD
301: LLDI

Best Arabidopsis Sequence Match ( AT2G16370.1 )
(BLAST)

001: MATTTLNDSV TTTLASEPQR TYQVVVAATK EMGIGKDGKL PWNLPTDLKF FKDITLTTSD SSKKNAVVMG RKTWESIPIK YRPLSGRLNV VLTRSGGFDI
101: ANTENVVTCS SVDSALDLLA APPYCLSIER VFVIGGGDIL REALNRPSCD AIHLTEIDTS VDCDTFIPAI DTSVYQPWSS SFPVTENGLR FCFTTFVRVK
201: SSADESSDES NGSQSLQFDG KKFLFLPKMV FDQHEEFLYL NMVEDIISNG NVKNDRTGTG TLSKFGCQMK FNLRRSFPLL TTKRVFWRGV VEELLWFISG
301: STNAKVLQEK GIHIWDGNAS REYLDGIGLT EREEGDLGPV YGFQWRHFGA KYTDMHADYT GQGFDQLVDV IDKIKNNPDD RRIIMSAWNP SDLKLMALPP
401: CHMFAQFYVA EGELSCQMYQ RSADMGLGVP FNIASYSLLT CMLAHVCDLV PGDFIHVLGD AHVYKTHVRP LQEQLLNLPK PFPVMKINPE KKQIDSFVAS
501: DFDLTGYDPH KKIEMKMAV

Arabidopsis Description

THY-1Bifunctional dihydrofolate reductase-thymidylate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q05762]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.