CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011543.1-P	Field mustard	cytosol	86.12	98.2
CDX69070	Canola	mitochondrion, plastid	93.5	96.73
CDX72487	Canola	cytosol	31.46	95.72
CDY45317	Canola	cytosol	80.32	91.95
CDX89705	Canola	cytosol	73.64	81.52
AT4G34570.1	Thale cress	mitochondrion	80.67	81.24
KRH60811	Soybean	nucleus	68.37	73.4
KRH29421	Soybean	cytosol	68.01	73.3
KRH24440	Soybean	cytosol, nucleus	68.19	73.21
PGSC0003DMT400001937	Potato	cytosol	66.61	71.92
Solyc01g109830.2.1	Tomato	cytosol	66.43	71.73
VIT_18s0001g12940.t01	Wine grape	cytosol	63.27	71.71
Os11t0484400-01	Rice	cytosol, plasma membrane, plastid	65.55	71.59
Os12t0446900-01	Rice	cytosol	65.55	71.59
Zm00001d007318_P001	Maize	cytosol	65.38	71.13
KRH51504	Soybean	nucleus	68.72	68.84
CDY02264	Canola	cytosol	72.41	66.67
KXG28376	Sorghum	mitochondrion, plastid	67.14	65.64
Zm00001d049188_P008	Maize	mitochondrion	67.14	65.64
Zm00001d030396_P001	Maize	cytosol	31.99	63.86
TraesCS2B01G547000.1	Wheat	plastid	64.67	63.78
TraesCS2A01G518600.1	Wheat	mitochondrion, plastid	64.32	63.54
TraesCS2D01G520000.1	Wheat	plastid	64.32	63.54
Zm00001d050448_P001	Maize	cytosol	31.81	63.51
VIT_18s0075g01010.t01	Wine grape	cytosol, mitochondrion	9.31	60.92
HORVU2Hr1G114640.8	Barley	cytosol, plastid	64.67	60.73
VIT_03s0038g04500.t01	Wine grape	golgi	67.14	60.63
GSMUA_Achr2P14300_001	Banana	cytosol	53.6	60.4
CDX83194	Canola	cytosol	43.06	57.24
CDY21464	Canola	cytosol	28.47	53.29
Os11t0615250-00	Rice	cytosol	7.73	39.64

Protein Annotations

KEGG:00240+2.1.1.45	KEGG:00670+1.5.1.3	KEGG:00670+1.5.1.3+2.1.1.45	KEGG:00670+2.1.1.45	KEGG:00790+1.5.1.3	Gene3D:3.30.572.10
Gene3D:3.40.430.10	MapMan:6.3.1.2	MapMan:7.5.5	GO:A0A078CK34	EnsemblPlants:CDX75443	ProteinID:CDX75443
ProteinID:CDX75443.1	InterPro:DHFR-TS	InterPro:DHFR-like_dom_sf	InterPro:DHFR_CS	InterPro:DHFR_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004146	GO:GO:0004799	GO:GO:0006139	GO:GO:0006231	GO:GO:0006730
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046654
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00121334001	InterPro:IPR001796	InterPro:IPR024072	InterPro:IPR036926	HAMAP:MF_00008
PFAM:PF00186	PFAM:PF00303	PIRSF:PIRSF000389	PRINTS:PR00108	ScanProsite:PS00075	ScanProsite:PS00091
PFscan:PS51330	PANTHER:PTHR11548	PANTHER:PTHR11548:SF7	MetaCyc:PWY-3841	MetaCyc:PWY-6614	MetaCyc:PWY-7184
MetaCyc:PWY-7187	MetaCyc:PWY-7198	MetaCyc:PWY-7199	MetaCyc:PWY-7210	SUPFAM:SSF53597	SUPFAM:SSF55831
TIGRFAMs:TIGR03284	InterPro:Thymidate_synth/dCMP_Mease	InterPro:Thymidate_synth/dCMP_Mease_sf	InterPro:Thymidylate_synthase	InterPro:Thymidylate_synthase_AS	UniPathway:UPA00077
UniPathway:UPA00575	UniParc:UPI0004EEBB96	:	:	:	:

Description

BnaA01g02590D

Coordinates

chrLK031804:-:1117312..1120410

Molecular Weight (calculated)

64164.5 Da

IEP (calculated)

8.206

GRAVY (calculated)

-0.187

Length

569 amino acids

Sequence
(BLAST)

001: MCRFKIGMRI ETACNFRFLC HRCLHSPIKI LPFAFKSALL PLSQRWPSSL PSIFKVSLST MSNNLNGHVT MPSEPQRAYQ VVVAATKQMG IGKDGKLPWT
101: LPTDLKFFKE LTLTTSDSSK KNAVVMGRKT WESIPTKYKP LSGRLNVVLT RSSGFDIANA ENVVTCRSID SALDLLAGPP YRLSIEKVFV IGGGEVLRDS
201: LNGARCEAIH LTEIDTSVEC DTFVPEIDAS AYQPWCSSLP VCENGLRFSF TTYVRVKSDE SKEALGVDWR KFSSLLPKKV FERHEEFLYL NMVNEIISNG
301: NVKNDRTGTG TLSKFGCQMT FNLRRSFPLL TTKRVFWRGV VEELLWFISG STNAKLLQEK GIHIWDGNAS REYLDGIGLT EREEGDLGPV YGFQWRHFGA
401: KYTDMHADYT GQGFDQLLDV INKIKNNPDD RRIIMSAWNP SDLKLMALPP CHMFAQFYVA NGELSCQMYQ RSADMGLGVP FNIASYSLLT CILAHVCDLV
501: PGDFIHVIGD AHVYKNHVRP LQEQLENPPK PFPVMKINPE KKHIDSFVAA DFELIGYDPH KKIDMKMAV

Best Arabidopsis Sequence Match ( AT4G34570.1 )
(BLAST)

001: MRCLQNSAKT LPLAFKSALL PLSQRWFCKF SPKPSSLTNI FKVSISTMAN TLNGNVIMTS KPQSTYQVVV AATKEMGIGK DGKLPWNLPT DLKFFKDLTL
101: STSDSAKKNA VVMGRKTWES IPKKYRPLSG RLNVVLSRSS GFDIANTENV VTCSSIDSAL DLLAAPPFSL SIEKVFVIGG GDILREALNK PSCEAIHITE
201: IDTSIDCDTF IPTVDTSAYQ PWCSSFPICE NGLRFSFTTH VRVKSSSAGE ASDESDGSKV LQVDWKKFSS VLPKMIFDRH EEYLYLNLVK EIISNGNLKD
301: DRTGTGTLSK FGCQMKFNLR RNFPLLTTKR VFWRGVVEEL LWFISGSTNA KVLQEKGIRI WDGNASRAYL DGIGLTEREE GDLGPVYGFQ WRHFGAKYTD
401: MHADYTGQGF DQLLDVINKI KNNPDDRRII MSAWNPSDLK LMALPPCHMF AQFYVANGEL SCQMYQRSAD MGLGVPFNIA SYSLLTCILA HVCDLVPGDF
501: IHVIGDAHVY KNHVRPLQEQ LENPPKPFPV LKINPEKKDI DSFVADDFEL IGYDPHKKID MKMAV

Arabidopsis Description

THY-2Bifunctional dihydrofolate reductase-thymidylate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q05763]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.