CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72487	Canola	cytosol	32.36	95.19
CDX75443	Canola	mitochondrion	96.73	93.5
CDY45317	Canola	cytosol	82.0	90.74
CDX89705	Canola	cytosol	76.73	82.1
AT4G34570.1	Thale cress	mitochondrion	83.82	81.59
KRH60811	Soybean	nucleus	70.73	73.4
KRH29421	Soybean	cytosol	70.36	73.3
KRH24440	Soybean	cytosol, nucleus	70.55	73.21
Os11t0484400-01	Rice	cytosol, plasma membrane, plastid	68.55	72.36
Os12t0446900-01	Rice	cytosol	68.36	72.17
PGSC0003DMT400001937	Potato	cytosol	69.09	72.11
Solyc01g109830.2.1	Tomato	cytosol	69.09	72.11
VIT_18s0001g12940.t01	Wine grape	cytosol	65.64	71.91
Zm00001d007318_P001	Maize	cytosol	68.36	71.89
KRH51504	Soybean	nucleus	71.64	69.37
CDY02264	Canola	cytosol	74.91	66.67
Zm00001d049188_P008	Maize	mitochondrion	69.45	65.64
KXG28376	Sorghum	mitochondrion, plastid	69.45	65.64
TraesCS2B01G547000.1	Wheat	plastid	68.0	64.82
Zm00001d030396_P001	Maize	cytosol	33.45	64.56
TraesCS2A01G518600.1	Wheat	mitochondrion, plastid	67.27	64.24
TraesCS2D01G520000.1	Wheat	plastid	67.27	64.24
Zm00001d050448_P001	Maize	cytosol	33.09	63.86
HORVU2Hr1G114640.8	Barley	cytosol, plastid	67.45	61.22
GSMUA_Achr2P14300_001	Banana	cytosol	56.18	61.19
VIT_18s0075g01010.t01	Wine grape	cytosol, mitochondrion	9.64	60.92
VIT_03s0038g04500.t01	Wine grape	golgi	69.45	60.63
CDX83194	Canola	cytosol	45.45	58.41
CDY21464	Canola	cytosol	29.64	53.62
Os11t0615250-00	Rice	cytosol	8.0	39.64

Protein Annotations

KEGG:00240+2.1.1.45	KEGG:00670+1.5.1.3	KEGG:00670+1.5.1.3+2.1.1.45	KEGG:00670+2.1.1.45	KEGG:00790+1.5.1.3	Gene3D:3.30.572.10
Gene3D:3.40.430.10	MapMan:6.3.1.2	MapMan:7.5.5	GO:A0A078BW96	EnsemblPlants:CDX69070	ProteinID:CDX69070
ProteinID:CDX69070.1	InterPro:DHFR-TS	InterPro:DHFR-like_dom_sf	InterPro:DHFR_CS	InterPro:DHFR_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004146	GO:GO:0004799	GO:GO:0006139	GO:GO:0006231	GO:GO:0006730
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046654
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00130841001	InterPro:IPR001796	InterPro:IPR024072	InterPro:IPR036926	HAMAP:MF_00008
PFAM:PF00186	PFAM:PF00303	PIRSF:PIRSF000389	PRINTS:PR00108	ScanProsite:PS00075	ScanProsite:PS00091
PFscan:PS51330	PANTHER:PTHR11548	PANTHER:PTHR11548:SF7	MetaCyc:PWY-3841	MetaCyc:PWY-6614	MetaCyc:PWY-7184
MetaCyc:PWY-7187	MetaCyc:PWY-7198	MetaCyc:PWY-7199	MetaCyc:PWY-7210	SUPFAM:SSF53597	SUPFAM:SSF55831
TIGRFAMs:TIGR03284	InterPro:Thymidate_synth/dCMP_Mease	InterPro:Thymidate_synth/dCMP_Mease_sf	InterPro:Thymidylate_synthase	InterPro:Thymidylate_synthase_AS	UniPathway:UPA00077
UniPathway:UPA00575	UniParc:UPI0004EEF185	:	:	:	:

Description

BnaC01g03830D

Coordinates

chrLK031789:-:2754978..2757982

Molecular Weight (calculated)

61913.4 Da

IEP (calculated)

7.737

GRAVY (calculated)

-0.236

Length

550 amino acids

Sequence
(BLAST)

001: MFRCLHNPIK TLPFAFKSAL LPLSQRWPSS LPSIFKVSVS TMSNNLNGHV SLPSEPQRAY QVVVAATKEM GIGKDGKLPW TLPTDLKFFK ELTLTTSDPS
101: KKNAVVMGRK TWESIPTKYR PLSGRLNVVL TRSSGFDIAN TENVVTCRSI DSALDLLAGP PYRLSIEKVF VIGGGEVLRD SLNGPRCEAI HLTEIDTSVD
201: CDTFVPEIDA SAYQPWCSSL PVCENGLRFS FTTYVRVKSD ESKEGLHVDW RKFSSLLPKK VFERHEEFLY LNMVNEIISN GNVKNDRTGT GTLSKFGCQM
301: TFNLRRSFPL LTTKRVFWRG VVEELLWFIS GSTNAKLLQE KGIHIWDGNA SREYLDGIGL TEREEGDLGP VYGFQWRHFG AKYTDMHADY TGQGFDQLSD
401: VINKIKNNPD DRRIIMSAWN PSDLKAMALP PCHMFAQFYV ANGELSCQMY QRSADMGLGV PFNIASYSLL TCILAHVCDL VPGDFIHVIG DAHVYKNHVR
501: PLQEQLENPP KPFPVLKINP EKKHIDSFVA ADFELIGYDP HKKIDMKMAV

Best Arabidopsis Sequence Match ( AT4G34570.1 )
(BLAST)

001: MRCLQNSAKT LPLAFKSALL PLSQRWFCKF SPKPSSLTNI FKVSISTMAN TLNGNVIMTS KPQSTYQVVV AATKEMGIGK DGKLPWNLPT DLKFFKDLTL
101: STSDSAKKNA VVMGRKTWES IPKKYRPLSG RLNVVLSRSS GFDIANTENV VTCSSIDSAL DLLAAPPFSL SIEKVFVIGG GDILREALNK PSCEAIHITE
201: IDTSIDCDTF IPTVDTSAYQ PWCSSFPICE NGLRFSFTTH VRVKSSSAGE ASDESDGSKV LQVDWKKFSS VLPKMIFDRH EEYLYLNLVK EIISNGNLKD
301: DRTGTGTLSK FGCQMKFNLR RNFPLLTTKR VFWRGVVEEL LWFISGSTNA KVLQEKGIRI WDGNASRAYL DGIGLTEREE GDLGPVYGFQ WRHFGAKYTD
401: MHADYTGQGF DQLLDVINKI KNNPDDRRII MSAWNPSDLK LMALPPCHMF AQFYVANGEL SCQMYQRSAD MGLGVPFNIA SYSLLTCILA HVCDLVPGDF
501: IHVIGDAHVY KNHVRPLQEQ LENPPKPFPV LKINPEKKDI DSFVADDFEL IGYDPHKKID MKMAV

Arabidopsis Description

THY-2Bifunctional dihydrofolate reductase-thymidylate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q05763]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.