CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007318_P001	Maize	cytosol	86.08	95.79
Zm00001d049188_P008	Maize	mitochondrion	95.02	95.02
Zm00001d050448_P001	Maize	cytosol	45.36	92.63
Zm00001d030396_P001	Maize	cytosol	45.36	92.63
Os11t0484400-01	Rice	cytosol, plasma membrane, plastid	80.41	89.83
CDX72487	Canola	cytosol	25.77	80.21
Bra011543.1-P	Field mustard	cytosol	64.43	75.15
CDX89705	Canola	cytosol	66.32	75.1
KRH29421	Soybean	cytosol	67.7	74.62
VIT_18s0001g12940.t01	Wine grape	cytosol	64.09	74.3
KRH24440	Soybean	cytosol, nucleus	67.53	74.15
KRH60811	Soybean	nucleus	67.35	73.96
AT2G16370.1	Thale cress	cytosol	65.81	73.8
Bra017662.1-P	Field mustard	cytosol	63.23	73.02
CDY45317	Canola	cytosol	62.03	72.64
Solyc01g109830.2.1	Tomato	cytosol	64.95	71.73
PGSC0003DMT400001937	Potato	cytosol	63.92	70.59
KRH51504	Soybean	nucleus	68.21	69.89
CDX69070	Canola	mitochondrion, plastid	65.64	69.45
AT4G34570.1	Thale cress	mitochondrion	65.46	67.43
CDX75443	Canola	mitochondrion	65.64	67.14
GSMUA_Achr2P14300_001	Banana	cytosol	57.73	66.53
CDY02264	Canola	cytosol	65.12	61.33
Bra013079.1-P	Field mustard	cytosol	65.12	61.33
CDX83194	Canola	cytosol	41.58	56.54
Bra000581.1-P	Field mustard	cytosol	42.96	55.31
AT2G21550.1	Thale cress	cytosol, plasma membrane, plastid	46.74	55.28
CDY21464	Canola	cytosol	26.12	50.0

Protein Annotations

KEGG:00240+2.1.1.45	KEGG:00670+1.5.1.3	KEGG:00670+1.5.1.3+2.1.1.45	KEGG:00670+2.1.1.45	KEGG:00790+1.5.1.3	Gene3D:3.30.572.10
Gene3D:3.40.430.10	MapMan:6.3.1.2	MapMan:7.5.5	EntrezGene:8068714	UniProt:A0A1B6PRT5	InterPro:DHFR-TS
InterPro:DHFR-like_dom_sf	InterPro:DHFR_CS	InterPro:DHFR_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004146
GO:GO:0004799	GO:GO:0006139	GO:GO:0006231	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0009165	GO:GO:0009987	GO:GO:0016491
GO:GO:0016740	GO:GO:0032259	GO:GO:0046654	GO:GO:0055114	InterPro:IPR001796	InterPro:IPR024072
InterPro:IPR036926	EnsemblPlants:KXG28376	ProteinID:KXG28376	ProteinID:KXG28376.1	HAMAP:MF_00008	PFAM:PF00186
PFAM:PF00303	PIRSF:PIRSF000389	PRINTS:PR00108	ScanProsite:PS00075	ScanProsite:PS00091	PFscan:PS51330
PANTHER:PTHR11548	PANTHER:PTHR11548:SF7	MetaCyc:PWY-3841	MetaCyc:PWY-6614	MetaCyc:PWY-7184	MetaCyc:PWY-7187
MetaCyc:PWY-7198	MetaCyc:PWY-7199	MetaCyc:PWY-7210	EnsemblPlantsGene:SORBI_3005G115500	SUPFAM:SSF53597	SUPFAM:SSF55831
unigene:Sbi.1811	TIGRFAMs:TIGR03284	InterPro:Thymidate_synth/dCMP_Mease	InterPro:Thymidate_synth/dCMP_Mease_sf	InterPro:Thymidylate_synthase	InterPro:Thymidylate_synthase_AS
UniParc:UPI00081AE4CE	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:50599644..50612412

Molecular Weight (calculated)

65794.1 Da

IEP (calculated)

7.936

GRAVY (calculated)

-0.239

Length

582 amino acids

Sequence
(BLAST)

001: MLVAEVLRAG AYISMFSRRA CKVARFSSAA CSPISQFRKP QFLDLRTKSR PYHFIQPRLI AMAAAPANGD SQSGPQRNYQ VVVAATRDMG IGKDGVLPWK
101: LLGDLKFFKE LTLTTSDPAK KNAVIMGRKT WESIPVKSRP LPGRLNVILT RSGSFDFATV ENVVICGSMN SALELLASTP YCLSIEKVFV VGGGQVLREY
201: LNGPACEAIH LTDIQSSIEC DTFIPPVDFS VFQPWYSSFP VVESNIRHSF VTFVRVRKSV AETHESNGKE STEVDTKNDK FEIENFSFLP EMVYDRHEEY
301: QYLNLVEDII RSGAQKNDRT GTGTMSKFGC QMRFNLRKNF PLLTTKRVFW RGVVEELLWF ISGSTNAKVL QEKGIHIWDG NASREYLDSV GLAHREEGDL
401: GPVYGFQWRH FGAEYTDMHA DYTGKGFDQL MDVIDKIKNN PDDRRIIMSA WNPSDLKKMA LPPCHMFAQF YVENGELSCQ MYQRSADMGL GVPFNIASYS
501: LLTYMIAQVC DLSPGDFVHV IGDAHVYRTH VRALEEQIQK MPKPFPILKI NPSKKDIDSF MASDFKLVGY DPHQKIEMKM AV

Best Arabidopsis Sequence Match ( AT2G16370.1 )
(BLAST)

001: MATTTLNDSV TTTLASEPQR TYQVVVAATK EMGIGKDGKL PWNLPTDLKF FKDITLTTSD SSKKNAVVMG RKTWESIPIK YRPLSGRLNV VLTRSGGFDI
101: ANTENVVTCS SVDSALDLLA APPYCLSIER VFVIGGGDIL REALNRPSCD AIHLTEIDTS VDCDTFIPAI DTSVYQPWSS SFPVTENGLR FCFTTFVRVK
201: SSADESSDES NGSQSLQFDG KKFLFLPKMV FDQHEEFLYL NMVEDIISNG NVKNDRTGTG TLSKFGCQMK FNLRRSFPLL TTKRVFWRGV VEELLWFISG
301: STNAKVLQEK GIHIWDGNAS REYLDGIGLT EREEGDLGPV YGFQWRHFGA KYTDMHADYT GQGFDQLVDV IDKIKNNPDD RRIIMSAWNP SDLKLMALPP
401: CHMFAQFYVA EGELSCQMYQ RSADMGLGVP FNIASYSLLT CMLAHVCDLV PGDFIHVLGD AHVYKTHVRP LQEQLLNLPK PFPVMKINPE KKQIDSFVAS
501: DFDLTGYDPH KKIEMKMAV

Arabidopsis Description

THY-1Bifunctional dihydrofolate reductase-thymidylate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q05762]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.