Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83194 | Canola | cytosol | 67.07 | 77.1 |
| Bra000581.1-P | Field mustard | cytosol | 70.73 | 76.99 |
| CDY21464 | Canola | cytosol | 44.31 | 71.71 |
| VIT_18s0075g01010.t01 | Wine grape | cytosol, mitochondrion | 9.96 | 56.32 |
| Zm00001d030396_P001 | Maize | cytosol | 31.3 | 54.04 |
| Zm00001d050448_P001 | Maize | cytosol | 30.69 | 52.98 |
| PGSC0003DMT400001937 | Potato | cytosol | 56.71 | 52.94 |
| KRH29421 | Soybean | cytosol | 56.71 | 52.84 |
| KRH24440 | Soybean | cytosol, nucleus | 56.91 | 52.83 |
| KRH60811 | Soybean | nucleus | 56.91 | 52.83 |
| AT2G16370.1 | Thale cress | cytosol | 55.69 | 52.79 |
| Os12t0446900-01 | Rice | cytosol | 55.69 | 52.59 |
| Zm00001d007318_P001 | Maize | cytosol | 55.28 | 52.01 |
| Solyc01g109830.2.1 | Tomato | cytosol | 55.49 | 51.8 |
| Os11t0484400-01 | Rice | cytosol, plasma membrane, plastid | 54.47 | 51.44 |
| VIT_18s0001g12940.t01 | Wine grape | cytosol | 52.03 | 51.0 |
| KRH51504 | Soybean | nucleus | 57.32 | 49.65 |
| AT4G34570.1 | Thale cress | mitochondrion | 56.71 | 49.38 |
| KXG28376 | Sorghum | mitochondrion, plastid | 55.28 | 46.74 |
| Zm00001d049188_P008 | Maize | mitochondrion | 54.67 | 46.22 |
| TraesCS2D01G520000.1 | Wheat | plastid | 54.06 | 46.18 |
| TraesCS2A01G518600.1 | Wheat | mitochondrion, plastid | 53.86 | 46.01 |
| TraesCS2B01G547000.1 | Wheat | plastid | 53.46 | 45.58 |
| GSMUA_Achr2P14300_001 | Banana | cytosol | 46.54 | 45.35 |
| VIT_03s0038g04500.t01 | Wine grape | golgi | 57.52 | 44.92 |
| HORVU2Hr1G114640.8 | Barley | cytosol, plastid | 54.27 | 44.06 |
| Os11t0615250-00 | Rice | cytosol | 6.1 | 27.03 |
Protein Annotations
| KEGG:00240+2.1.1.45 | KEGG:00670+1.5.1.3 | KEGG:00670+1.5.1.3+2.1.1.45 | KEGG:00670+2.1.1.45 | KEGG:00790+1.5.1.3 | Gene3D:3.30.572.10 |
| Gene3D:3.40.430.10 | MapMan:6.3.1.2 | MapMan:7.5.5 | EntrezGene:816694 | ProteinID:AAD23649.1 | ProteinID:AEC07195.1 |
| ArrayExpress:AT2G21550 | EnsemblPlantsGene:AT2G21550 | RefSeq:AT2G21550 | TAIR:AT2G21550 | RefSeq:AT2G21550-TAIR-G | EnsemblPlants:AT2G21550.1 |
| TAIR:AT2G21550.1 | Unigene:At.50088 | InterPro:DHFR-TS | InterPro:DHFR-like_dom_sf | InterPro:DHFR_CS | InterPro:DHFR_dom |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004146 | GO:GO:0004799 | GO:GO:0006139 | GO:GO:0006231 |
| GO:GO:0006545 | GO:GO:0006730 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0009058 |
| GO:GO:0009165 | GO:GO:0009987 | GO:GO:0016491 | GO:GO:0016740 | GO:GO:0032259 | GO:GO:0046654 |
| GO:GO:0055114 | InterPro:IPR001796 | InterPro:IPR024072 | InterPro:IPR036926 | RefSeq:NP_179750.1 | PFAM:PF00186 |
| PFAM:PF00303 | PIRSF:PIRSF000389 | PO:PO:0000293 | PO:PO:0009005 | PO:PO:0009047 | PO:PO:0020100 |
| PRINTS:PR00108 | ScanProsite:PS00075 | PFscan:PS51330 | PANTHER:PTHR11548 | PANTHER:PTHR11548:SF7 | UniProt:Q9SIK4 |
| SUPFAM:SSF53597 | SUPFAM:SSF55831 | TIGRFAMs:TIGR03284 | InterPro:Thymidate_synth/dCMP_Mease | InterPro:Thymidate_synth/dCMP_Mease_sf | InterPro:Thymidylate_synthase |
| UniParc:UPI00000A7549 | SEG:seg | : | : | : | : |
Description
Bifunctional dihydrofolate reductase-thymidylate synthase [Source:UniProtKB/TrEMBL;Acc:Q9SIK4]
Coordinates
chr2:+:9227209..9230189
Molecular Weight (calculated)
55324.1 Da
IEP (calculated)
6.102
GRAVY (calculated)
-0.209
Length
492 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTGETICN NGQSAVSVTR RRSYQVVIAA TRDMGLGMDM KLPWDLPSEY QFFQDVTTRT SDPTKRNATI MGRKSWESTP LEIRPLPGRL NIVLTKSSCH
101: NIAIDENVLV SSSMESALEL LATEPYSLSI EKVFVIGGGE LLRNYMNASI CDAIHLTEID ISVPCDAFAP RVDTSLYRPW YSSFPVVENG IRYSFNTYVR
201: RKDAIVGSGE KKSVAESDLK EYSFLPKMVF ERHEEFGYLN LVQNIISSGD MNDNSTLSKF GCQMRFNLRK TFPLLTTKKI FWLGVVEEIL QLISGSNNPK
301: ENGSHIWDTD EAKEYLDSFG VNATEEDGDN PFLHGLHWKH CDARFVIQEF SQLSDVINKI KNNPHDQRIM LAACNPLDFK LSVSPCHTFT QFYVANGEVS
401: CQIYQSSTEA SIGIPFSIAT YSLLTCIIAH VCDLGAGDFI HVIGQAYINK AHVKAIQKQL QISPKPFPIL KINPEKKKMD NFEASDLELM RI
101: NIAIDENVLV SSSMESALEL LATEPYSLSI EKVFVIGGGE LLRNYMNASI CDAIHLTEID ISVPCDAFAP RVDTSLYRPW YSSFPVVENG IRYSFNTYVR
201: RKDAIVGSGE KKSVAESDLK EYSFLPKMVF ERHEEFGYLN LVQNIISSGD MNDNSTLSKF GCQMRFNLRK TFPLLTTKKI FWLGVVEEIL QLISGSNNPK
301: ENGSHIWDTD EAKEYLDSFG VNATEEDGDN PFLHGLHWKH CDARFVIQEF SQLSDVINKI KNNPHDQRIM LAACNPLDFK LSVSPCHTFT QFYVANGEVS
401: CQIYQSSTEA SIGIPFSIAT YSLLTCIIAH VCDLGAGDFI HVIGQAYINK AHVKAIQKQL QISPKPFPIL KINPEKKKMD NFEASDLELM RI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.