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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, plasma membrane, plastid

Predictor Summary:
  • nucleus 1
  • plastid 3
  • cytosol 2
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
EpiLoc:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d007318_P001 Maize cytosol 88.87 88.53
Zm00001d050448_P001 Maize cytosol 45.49 83.16
Zm00001d030396_P001 Maize cytosol 45.49 83.16
Os12t0446900-01 Rice cytosol 81.38 81.38
KXG28376 Sorghum mitochondrion, plastid 89.83 80.41
CDX72487 Canola cytosol 28.6 79.68
Zm00001d049188_P008 Maize mitochondrion 88.68 79.38
CDX89705 Canola cytosol 73.7 74.71
Bra011543.1-P Field mustard cytosol 71.4 74.55
VIT_18s0001g12940.t01 Wine grape cytosol 71.59 74.3
Solyc01g109830.2.1 Tomato cytosol 74.66 73.81
KRH60811 Soybean nucleus 74.66 73.4
KRH29421 Soybean cytosol 74.09 73.11
AT2G16370.1 Thale cress cytosol 72.55 72.83
PGSC0003DMT400001937 Potato cytosol 73.51 72.68
KRH24440 Soybean cytosol, nucleus 73.9 72.64
CDY45317 Canola cytosol 69.29 72.64
Bra017662.1-P Field mustard cytosol 70.25 72.62
KRH51504 Soybean nucleus 75.43 69.19
CDX69070 Canola mitochondrion, plastid 72.36 68.55
AT4G34570.1 Thale cress mitochondrion 71.59 66.02
CDX75443 Canola mitochondrion 71.59 65.55
GSMUA_Achr2P14300_001 Banana cytosol 63.53 65.54
Bra013079.1-P Field mustard cytosol 71.78 60.52
CDY02264 Canola cytosol 71.59 60.36
Bra000581.1-P Field mustard cytosol 48.18 55.53
CDX83194 Canola cytosol 45.49 55.37
AT2G21550.1 Thale cress cytosol, plasma membrane, plastid 51.44 54.47
CDY21464 Canola cytosol 28.79 49.34
Os11t0615250-00 Rice cytosol 9.79 45.95
Protein Annotations
KEGG:00240+2.1.1.45KEGG:00670+1.5.1.3KEGG:00670+1.5.1.3+2.1.1.45KEGG:00670+2.1.1.45KEGG:00790+1.5.1.3Gene3D:3.30.572.10
Gene3D:3.40.430.10EntrezGene:4350527MapMan:6.3.1.2MapMan:7.5.5ProteinID:ABA93693.1ProteinID:BAT14059.1
InterPro:DHFR-TSInterPro:DHFR-like_dom_sfInterPro:DHFR_CSInterPro:DHFR_domGO:GO:0003674GO:GO:0003824
GO:GO:0004146GO:GO:0004799GO:GO:0005575GO:GO:0006139GO:GO:0006231GO:GO:0006730
GO:GO:0008150GO:GO:0008152GO:GO:0008168GO:GO:0009058GO:GO:0009165GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0016491GO:GO:0016740GO:GO:0032259GO:GO:0046654
GO:GO:0055114InterPro:IPR001796InterPro:IPR024072InterPro:IPR036926HAMAP:MF_00008EnsemblPlantsGene:Os11g0484400
EnsemblPlants:Os11t0484400-01PFAM:PF00186PFAM:PF00303PIRSF:PIRSF000389PRINTS:PR00108ScanProsite:PS00075
ScanProsite:PS00091PFscan:PS51330PANTHER:PTHR11548PANTHER:PTHR11548:SF7UniProt:Q2R481SUPFAM:SSF53597
SUPFAM:SSF55831TIGRFAMs:TIGR03284InterPro:Thymidate_synth/dCMP_MeaseInterPro:Thymidate_synth/dCMP_Mease_sfInterPro:Thymidylate_synthaseInterPro:Thymidylate_synthase_AS
UniParc:UPI000068228BRefSeq:XP_015615085.1::::
Description
Similar to bifunctional dihydrofolate reductase-thymidylate synthase. (Os11t0484400-01)
Coordinates
chr11:+:17054072..17061369
Molecular Weight (calculated)
58555.4 Da
IEP (calculated)
7.055
GRAVY (calculated)
-0.208
Length
521 amino acids
Sequence
(BLAST)
001: MATTLSNGVS QNGPQRNYQV VVAATRDMGI GKDGVLPWKL LGDLKFFKEL TVTTADPVKK NAVIMGRKTW ESLPLKARPL PGRLNIILTR SGSFEFATVE
101: NVVICGSMNS ALELLSSTPY CLSIEKVFVI GGGQVLRESL NGPSCEAVHL TDIQSSIECD TFIPPIDLSV FQPWYSSLPV VESNIRHSFV TYVRVRKTMA
201: ETHDSNGKES ANDGIKSDKF ETENFSFLPK LIFDRHEEYH YLNLVEDIIR SGAQKNDRTG TGTLSKFGCQ MRFNLRNSFP LLTTKKVFWR GVVEELLWFI
301: SGSTSAKVLQ EKGIHIWDGN ASREYLDSVG LAHREEGDLG PVYGFQWRHF GAEYTDMHAD YTGKGFDQLM DVIDKIKNNP DDRRIILSAW NPSDLKKMAL
401: PPCHMFAQFY VESGELSCQM YQRSADMGLG VPFNIASYSL LTYMIAHVCG LSPGEFVHVI GDAHVYRTHV RALEEQIQKL PKPFPVLKIN PLKKDIDSFV
501: ASDFKLVGYD PHQKIEMKMA I
Best Arabidopsis Sequence Match ( AT2G16370.1 )
(BLAST)
001: MATTTLNDSV TTTLASEPQR TYQVVVAATK EMGIGKDGKL PWNLPTDLKF FKDITLTTSD SSKKNAVVMG RKTWESIPIK YRPLSGRLNV VLTRSGGFDI
101: ANTENVVTCS SVDSALDLLA APPYCLSIER VFVIGGGDIL REALNRPSCD AIHLTEIDTS VDCDTFIPAI DTSVYQPWSS SFPVTENGLR FCFTTFVRVK
201: SSADESSDES NGSQSLQFDG KKFLFLPKMV FDQHEEFLYL NMVEDIISNG NVKNDRTGTG TLSKFGCQMK FNLRRSFPLL TTKRVFWRGV VEELLWFISG
301: STNAKVLQEK GIHIWDGNAS REYLDGIGLT EREEGDLGPV YGFQWRHFGA KYTDMHADYT GQGFDQLVDV IDKIKNNPDD RRIIMSAWNP SDLKLMALPP
401: CHMFAQFYVA EGELSCQMYQ RSADMGLGVP FNIASYSLLT CMLAHVCDLV PGDFIHVLGD AHVYKTHVRP LQEQLLNLPK PFPVMKINPE KKQIDSFVAS
501: DFDLTGYDPH KKIEMKMAV
Arabidopsis Description
THY-1Bifunctional dihydrofolate reductase-thymidylate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q05762]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.