Factsheet for Bra013079.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02264	Canola	cytosol	97.73	97.73
AT2G16370.1	Thale cress	cytosol	72.65	86.51
Bra011543.1-P	Field mustard	cytosol	66.02	81.76
Bra017662.1-P	Field mustard	cytosol	64.89	79.56
KRH29421	Soybean	cytosol	61.97	72.54
Zm00001d007318_P001	Maize	cytosol	61.16	72.28
KRH24440	Soybean	cytosol, nucleus	61.97	72.26
VIT_18s0001g12940.t01	Wine grape	cytosol	58.58	72.11
PGSC0003DMT400001937	Potato	cytosol	61.49	72.11
Os12t0446900-01	Rice	cytosol	60.68	71.98
Os11t0484400-01	Rice	cytosol, plasma membrane, plastid	60.52	71.78
Solyc01g109830.2.1	Tomato	cytosol	61.16	71.73
KRH60811	Soybean	nucleus	61.33	71.51
Zm00001d030396_P001	Maize	cytosol	31.07	67.37
Zm00001d050448_P001	Maize	cytosol	30.74	66.67
KRH51504	Soybean	nucleus	61.0	66.37
KXG28376	Sorghum	mitochondrion, plastid	61.33	65.12
Zm00001d049188_P008	Maize	mitochondrion	61.0	64.78
TraesCS2B01G547000.1	Wheat	plastid	59.71	63.95
TraesCS2A01G518600.1	Wheat	mitochondrion, plastid	59.39	63.72
TraesCS2D01G520000.1	Wheat	plastid	59.22	63.54
VIT_18s0075g01010.t01	Wine grape	cytosol, mitochondrion	8.9	63.22
VIT_03s0038g04500.t01	Wine grape	golgi	62.46	61.27
HORVU2Hr1G114640.8	Barley	cytosol, plastid	59.55	60.73
GSMUA_Achr2P14300_001	Banana	cytosol	49.03	60.0
Bra000581.1-P	Field mustard	cytosol	42.23	57.74
Os11t0615250-00	Rice	cytosol	7.61	42.34

Protein Annotations

KEGG:00240+2.1.1.45	KEGG:00670+1.5.1.3	KEGG:00670+1.5.1.3+2.1.1.45	KEGG:00670+2.1.1.45	KEGG:00790+1.5.1.3	Gene3D:1.10.10.2780
MapMan:17.1.3.1.26	Gene3D:3.30.572.10	Gene3D:3.40.430.10	MapMan:6.3.1.2	MapMan:7.5.5	EnsemblPlantsGene:Bra013079
EnsemblPlants:Bra013079.1	EnsemblPlants:Bra013079.1-P	InterPro:DHFR-TS	InterPro:DHFR-like_dom_sf	InterPro:DHFR_CS	InterPro:DHFR_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0004146	GO:GO:0004799	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006231	GO:GO:0006545
GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0009165
GO:GO:0009987	GO:GO:0016491	GO:GO:0016740	GO:GO:0032259	GO:GO:0046654	GO:GO:0055114
InterPro:IPR001796	InterPro:IPR024072	InterPro:IPR036926	UniProt:M4D9B9	HAMAP:MF_00008	PFAM:PD012268
PFAM:PF00186	PFAM:PF00303	PFAM:PF03297	PIRSF:PIRSF000389	PRINTS:PR00108	ScanProsite:PS00075
ScanProsite:PS00091	PFscan:PS51330	PANTHER:PTHR11548	PANTHER:PTHR11548:SF7	InterPro:Ribosomal_S25	SUPFAM:SSF53597
SUPFAM:SSF55831	TIGRFAMs:TIGR03284	InterPro:Thymidate_synth/dCMP_Mease	InterPro:Thymidate_synth/dCMP_Mease_sf	InterPro:Thymidylate_synthase	InterPro:Thymidylate_synthase_AS
UniParc:UPI0002540AE2	SEG:seg	:	:	:	:

Description

AT2G16370 (E=4e-268) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase

Coordinates

chrA03:-:20585769..20589492

Molecular Weight (calculated)

69322.1 Da

IEP (calculated)

8.987

GRAVY (calculated)

-0.388

Length

618 amino acids

Sequence
(BLAST)

001: MTTTLNADAI TPDPQRTYQV VVAATKQMGI GKDGKLPWNL PTDLKFFKDI TQTTSDPTKK NAVVMGRKTW EAIPTKHRPL PGRLNVVLTR SGGFDIANTE
101: NVVTCSSVDS ALHLLAAPPY CLSIERVFVI GGGDILREAL NMPSCDAIHL TEIDTSIECD TFIPEVDTCV YQPWCSSVPV TENGLRFRFT SFVRVKSSAD
201: ESSSNGSQQS PLQFDGKRFS FLPKMVFDQH EEFRYLNMVG DIISNGNVKN DRTGTGTLSK FGTQMKFNLR RSFPLLTTKR VFWRGVVEEL LWFISGSTNA
301: KVLQGKDIHI WDGNASREYL DGIGLSEREE GDLGRVYGFQ WRHFGAKYTD MHADYTSQGF DQLADVIDKI KNNPDDRRII LSAWNPSDLK LMALPPCHMF
401: AQFYVAEGEL SCQMYQRSAD MSLGVPFNIA SYSLLTCMLA HVCDLVPGDF VHVIGDAHVY RTHVRPLQEQ LQNPPKPFPI NAEKKDIDSF VADDFDLIGY
501: EPHKKIEMKM AAPKKDKVPP PSSKPAKSGG GKQKKKKWSK GKQKEKVNNM VLFDQATYDK LLSEAPKFKL ITPSILSDRL RINGSLARKA IRDLMAKGTI
601: RMVSTHSSQQ IYTRATHN

Best Arabidopsis Sequence Match ( AT2G16370.1 )
(BLAST)

001: MATTTLNDSV TTTLASEPQR TYQVVVAATK EMGIGKDGKL PWNLPTDLKF FKDITLTTSD SSKKNAVVMG RKTWESIPIK YRPLSGRLNV VLTRSGGFDI
101: ANTENVVTCS SVDSALDLLA APPYCLSIER VFVIGGGDIL REALNRPSCD AIHLTEIDTS VDCDTFIPAI DTSVYQPWSS SFPVTENGLR FCFTTFVRVK
201: SSADESSDES NGSQSLQFDG KKFLFLPKMV FDQHEEFLYL NMVEDIISNG NVKNDRTGTG TLSKFGCQMK FNLRRSFPLL TTKRVFWRGV VEELLWFISG
301: STNAKVLQEK GIHIWDGNAS REYLDGIGLT EREEGDLGPV YGFQWRHFGA KYTDMHADYT GQGFDQLVDV IDKIKNNPDD RRIIMSAWNP SDLKLMALPP
401: CHMFAQFYVA EGELSCQMYQ RSADMGLGVP FNIASYSLLT CMLAHVCDLV PGDFIHVLGD AHVYKTHVRP LQEQLLNLPK PFPVMKINPE KKQIDSFVAS
501: DFDLTGYDPH KKIEMKMAV

Arabidopsis Description

THY-1Bifunctional dihydrofolate reductase-thymidylate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q05762]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.